pycom06g11840

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
17047976 .. 17052040
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11840.3

Sequence Viewer

Length: 897 bp
ATGGCGGAATCTGAGCCAGTGACGCCGTCTGCGTCGGCGCCGGCGACGCCTGGAACGCCACTGCCACTGTTTTCAGGGCCGAGAGTGGATTCGCTATCGTATGAGCGTAAGTCAATGCCGCGAACCAAGTGCTTCCCTGTGAATGCTCCTGCGTGGGGTCAATCTCCCACGTGCTTCAACGAGTTCCCTACTCCAACTGTCTCCCTCACCCGCAAGCTTGGAGCTGAGTTCGTAGGAACCTTCATCTTGATGTTTGCAGCAAGTGCTGGACCAATCGTGAACCAAAAGTACAACGGAGCAGAGAGCTTGATCGGAAATGCAGCATGCGCAGGGCTTGGCGTGATGATCGTGATTCTCTCCACTGGCCACATCTCTGGTGCGCATCTGAACCCATCTCTCACCATTGCATTTGCCGCCCTGCGACACTTCCCGTGGGTCCAAGTCCCAGCCTACATCGCAGCTCAGGTTTCGGCCTCCATTTGCGCCTCGTTTGCTCTCAAAGGGATTTTCCATCCGTACATGTCCGGCGGAGTCACGGTGCCTACCGTGAGTACTGGCCAGGCTTTTGGACTTGAGTTCATCATCACTTTTAATCTGTTGTTCGTTGTCACTGCTGTTGCAACTGACACTCGAGCGTTGGGAGAGTTGGCTGGTTTAGCAGTTGGGGCTACTGTCATGCTAAACATTCTTATTGCAGGGCCATCTAGCGGTGGTTCAATGAACCCGGTGCGCACTCTCGGTCCTGCTGTTGCCGCCGGAAACTACACGAAGTTGTGGATATACCTGGTGGCTCCTACCCTTGGAGCTCTTGCCGGGGCGGCCACCTACACAGCTGTGAAGCTCCGGGAAGATGAGGTGGACGCACCTGTGCGCGAGGCCAGGAGCTTCCGTCGCTAG

Protein Analysis

299

Amino Acids

30.97

Weight (kDa)

8.94

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 328, 381, 731
AccB1I GGYRCC 2 cut(s) 37, 538
AccII CGCG 2 cut(s) 121, 873
AciI CCGC 8 cut(s) 5, 119, 211, 414, 528, 708, 753, 818
AcoI YGGCCR 3 cut(s) 364, 556, 819
AcvI CACGTG 1 cut(s) 171
AcyI GRCGYC 3 cut(s) 23, 38, 47
AfaI GTAC 3 cut(s) 290, 518, 553
AfiI CCNNNNNNNGG 3 cut(s) 155, 707, 800
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 178, 717
AjnI CCWGG 4 cut(s) 49, 558, 783, 878
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 8 cut(s) 217, 224, 306, 461, 806, 833, 841, 885
AluI AGCT 8 cut(s) 217, 224, 306, 461, 806, 833, 841, 885
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 7 cut(s) 77, 364, 471, 556, 698, 819, 876
ApeKI GCWGC 3 cut(s) 257, 320, 458
AspLEI GCGC 6 cut(s) 40, 329, 382, 485, 732, 873
AspS9I GGNCC 5 cut(s) 77, 269, 436, 698, 740
AsuC2I CCSGG 3 cut(s) 725, 814, 845
AsuHPI GGTGA 2 cut(s) 199, 391
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 3 cut(s) 269, 436, 740
BalI TGGCCA 2 cut(s) 366, 558
BanI GGYRCC 2 cut(s) 37, 538
BanII GRGCYC 1 cut(s) 808
BbrPI CACGTG 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 3 cut(s) 269, 332, 470
BccI CCATC 3 cut(s) 400, 519, 709
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 4 cut(s) 51, 560, 785, 880
BcnI CCSGG 3 cut(s) 725, 814, 845
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 705, 895
BfoI RGCGCY 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 818
BisI GCNGC 7 cut(s) 119, 258, 321, 414, 459, 753, 819
BlsI GCNGC 7 cut(s) 120, 259, 322, 415, 460, 754, 820
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 7 cut(s) 51, 560, 725, 785, 814, 845, 880
Bme18I GGWCC 3 cut(s) 269, 436, 740
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 5 cut(s) 77, 269, 436, 698, 740
BmiI GGNNCC 5 cut(s) 39, 238, 437, 540, 792
BmrFI CCNGG 7 cut(s) 51, 560, 725, 785, 814, 845, 880
BmsI GCATC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 3 cut(s) 725, 814, 845
BsaAI YACGTR 1 cut(s) 171
BsaHI GRCGYC 3 cut(s) 23, 38, 47
BsaJI CCNNGG 3 cut(s) 431, 799, 813
BsaXI ACNNNNNCTCC 3 cut(s) 522, 552, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 707, 800
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 17, 367, 559
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 4 cut(s) 51, 560, 785, 880
BseDI CCNNGG 3 cut(s) 431, 799, 813
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 155, 707, 800
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 216, 476
BseNI ACTGG 3 cut(s) 17, 367, 559
BseXI GCAGC 3 cut(s) 269, 332, 470
BseYI CCCAGC 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 121, 873
BshFI GGCC 7 cut(s) 79, 366, 473, 558, 700, 821, 878
BshNI GGYRCC 2 cut(s) 37, 538
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 6 cut(s) 41, 525, 725, 756, 813, 844
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 3 cut(s) 155, 707, 800
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 7 cut(s) 79, 366, 473, 558, 700, 821, 878
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 2 cut(s) 309, 345
BspACI CCGC 8 cut(s) 5, 119, 211, 414, 528, 708, 753, 818
BspANI GGCC 7 cut(s) 79, 366, 473, 558, 700, 821, 878
BspCNI CTCAG 3 cut(s) 4, 217, 475
BspFNI CGCG 2 cut(s) 121, 873
BspLI GGNNCC 5 cut(s) 39, 238, 437, 540, 792
BspT107I GGYRCC 2 cut(s) 37, 538
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 3 cut(s) 17, 367, 559
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 3 cut(s) 431, 799, 813
BssMI GATC 2 cut(s) 309, 345
BssNI GRCGYC 3 cut(s) 23, 38, 47
BssT1I CCWWGG 1 cut(s) 799
Bst2UI CCWGG 4 cut(s) 51, 560, 785, 880
Bst4CI ACNGT 5 cut(s) 69, 199, 538, 547, 673
BstACI GRCGYC 3 cut(s) 23, 38, 47
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 42, 215, 325
BstDEI CTNAG 3 cut(s) 12, 225, 462
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 2 cut(s) 121, 873
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 6 cut(s) 40, 329, 382, 485, 732, 873
BstKTI GATC 2 cut(s) 312, 348
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 309, 345
BstNI CCWGG 4 cut(s) 51, 560, 785, 880
BstNSI RCATGY 2 cut(s) 327, 523
BstSCI CCNGG 7 cut(s) 49, 558, 723, 783, 812, 843, 878
BstUI CGCG 2 cut(s) 121, 873
BstV1I GCAGC 3 cut(s) 269, 332, 470
BstXI CCANNNNNNTGG 2 cut(s) 374, 566
BsuRI GGCC 7 cut(s) 79, 366, 473, 558, 700, 821, 878
BtgI CCRYGG 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 2 cut(s) 59, 609
BtsIMutI CAGTG 5 cut(s) 24, 59, 65, 360, 609
Cac8I GCNNGC 3 cut(s) 42, 215, 325
CfoI GCGC 6 cut(s) 40, 329, 382, 485, 732, 873
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 5 cut(s) 77, 269, 436, 698, 740
CseI GACGC 4 cut(s) 21, 31, 55, 869
CsiI ACCWGGT 1 cut(s) 783
Csp6I GTAC 3 cut(s) 289, 517, 552
CviAII CATG 3 cut(s) 324, 520, 676
CviQI GTAC 3 cut(s) 289, 517, 552
DdeI CTNAG 3 cut(s) 12, 225, 462
DinI GGCGCC 1 cut(s) 39
DpnI GATC 2 cut(s) 311, 347
DpnII GATC 2 cut(s) 309, 345
EaeI YGGCCR 3 cut(s) 364, 556, 819
EciI GGCGGA 2 cut(s) 20, 543
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 808
Eco47I GGWCC 3 cut(s) 269, 436, 740
Eco53kI GAGCTC 1 cut(s) 806
Eco72I CACGTG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 806
EcoRII CCWGG 4 cut(s) 49, 558, 783, 878
EcoT14I CCWWGG 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 808
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 799
FaeI CATG 3 cut(s) 327, 523, 679
FaiI YATR 5 cut(s) 102, 325, 521, 677, 781
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 323, 519, 675
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 7 cut(s) 119, 258, 321, 414, 459, 753, 819
FokI GGATG 1 cut(s) 498
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 7 cut(s) 119, 258, 321, 414, 459, 753, 819
FspAI RTGCGCAY 2 cut(s) 381, 731
FspBI CTAG 2 cut(s) 705, 895
FspI TGCGCA 3 cut(s) 328, 381, 731
GlaI GCGC 6 cut(s) 39, 328, 381, 484, 731, 872
GluI GCNGC 7 cut(s) 119, 258, 321, 414, 459, 753, 819
GsaI CCCAGC 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 7 cut(s) 79, 366, 473, 558, 700, 821, 878
HapII CCGG 6 cut(s) 41, 525, 725, 756, 813, 844
HgaI GACGC 4 cut(s) 21, 31, 55, 869
HhaI GCGC 6 cut(s) 40, 329, 382, 485, 732, 873
Hin1I GRCGYC 3 cut(s) 23, 38, 47
Hin1II CATG 3 cut(s) 327, 523, 679
Hin6I GCGC 6 cut(s) 38, 327, 380, 483, 730, 871
HinP1I GCGC 6 cut(s) 38, 327, 380, 483, 730, 871
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 8, 89, 352, 531
HpaII CCGG 6 cut(s) 41, 525, 725, 756, 813, 844
HphI GGTGA 2 cut(s) 199, 391
Hpy166II GTNNAC 2 cut(s) 280, 859
Hpy188I TCNGA 3 cut(s) 13, 314, 387
Hpy188III TCNNGA 3 cut(s) 247, 277, 349
Hpy8I GTNNAC 2 cut(s) 280, 859
Hpy99I CGWCG 3 cut(s) 37, 49, 894
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 5 cut(s) 69, 199, 538, 547, 673
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 257, 320, 407, 620, 695
HpyF3I CTNAG 3 cut(s) 12, 225, 462
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 3 cut(s) 23, 38, 47
Hsp92II CATG 3 cut(s) 327, 523, 679
HspAI GCGC 6 cut(s) 38, 327, 380, 483, 730, 871
KasI GGCGCC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 309, 345
LmnI GCTCC 7 cut(s) 151, 221, 296, 796, 803, 846, 882
Lsp1109I GCAGC 3 cut(s) 269, 332, 470
LweI GCATC 1 cut(s) 391
MabI ACCWGGT 1 cut(s) 783
MaeI CTAG 2 cut(s) 705, 895
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 19, 532, 607
MalI GATC 2 cut(s) 311, 347
MboI GATC 2 cut(s) 309, 345
MboII GAAGA 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 808
MlsI TGGCCA 2 cut(s) 366, 558
MluNI TGGCCA 2 cut(s) 366, 558
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 540
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 5 cut(s) 215, 484, 496, 847, 868
Mox20I TGGCCA 2 cut(s) 366, 558
MreI CGCCGGCG 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 40
MscI TGGCCA 2 cut(s) 366, 558
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 248, 833
Msp20I TGGCCA 2 cut(s) 366, 558
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 6 cut(s) 41, 525, 725, 756, 813, 844
MspR9I CCNGG 7 cut(s) 51, 560, 725, 785, 814, 845, 880
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 4 cut(s) 51, 560, 785, 880
MvnI CGCG 2 cut(s) 121, 873
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 38
NciI CCSGG 3 cut(s) 725, 814, 845
NdeII GATC 2 cut(s) 309, 345
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 3 cut(s) 327, 523, 679
NlaIV GGNNCC 5 cut(s) 39, 238, 437, 540, 792
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 3 cut(s) 19, 532, 607
NsbI TGCGCA 3 cut(s) 328, 381, 731
NspI RCATGY 2 cut(s) 327, 523
OliI CACNNNNGTG 1 cut(s) 833
PaeI GCATGC 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 630
PciI ACATGT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 41
PctI GAATGC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 8, 89, 352
PflFI GACNNNGTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 843
PkrI GCNGC 7 cut(s) 120, 259, 322, 415, 460, 754, 820
PleI GAGTC 1 cut(s) 539
PluTI GGCGCC 1 cut(s) 41
PmaCI CACGTG 1 cut(s) 171
PmlI CACGTG 1 cut(s) 171
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 1 cut(s) 171
PscI ACATGT 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 808
Psp6I CCWGG 4 cut(s) 49, 558, 783, 878
PspCI CACGTG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 4 cut(s) 49, 558, 783, 878
PspN4I GGNNCC 5 cut(s) 39, 238, 437, 540, 792
PspPI GGNCC 5 cut(s) 77, 269, 436, 698, 740
PspXI VCTCGAGB 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PsyI GACNNNGTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 290, 518, 553
RsaNI GTAC 3 cut(s) 289, 517, 552
RseI CAYNNNNRTG 2 cut(s) 248, 833
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 7 cut(s) 119, 258, 321, 414, 459, 753, 819
Sau3AI GATC 2 cut(s) 309, 345
Sau96I GGNCC 5 cut(s) 77, 269, 436, 698, 740
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 7 cut(s) 51, 560, 725, 785, 814, 845, 880
SduI GDGCHC 1 cut(s) 808
SexAI ACCWGGT 1 cut(s) 783
SfaNI GCATC 1 cut(s) 391
SfoI GGCGCC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 630
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 3 cut(s) 269, 436, 740
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 2 cut(s) 248, 833
SmlI CTYRAG 2 cut(s) 572, 630
SmoI CTYRAG 2 cut(s) 572, 630
SphI GCATGC 1 cut(s) 327
SsiI CCGC 8 cut(s) 5, 119, 211, 414, 528, 708, 753, 818
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 2 cut(s) 705, 895
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 7 cut(s) 49, 558, 723, 783, 812, 843, 878
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 5 cut(s) 69, 199, 538, 547, 673
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 631
TaqII GACCGA 1 cut(s) 728
TatI WGTACW 2 cut(s) 288, 551
TauI GCSGC 4 cut(s) 121, 416, 755, 821
TfiI GAWTC 3 cut(s) 8, 89, 352
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 5 cut(s) 24, 66, 72, 367, 616
TseFI GTSAC 3 cut(s) 19, 532, 607
TseI GCWGC 3 cut(s) 257, 320, 458
Tsp45I GTSAC 3 cut(s) 19, 532, 607
TspDTI ATGAA 3 cut(s) 232, 568, 734
TspGWI ACGGA 3 cut(s) 309, 504, 878
TspRI CASTG 5 cut(s) 24, 66, 72, 367, 616
Tth111I GACNNNGTC 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 269, 436, 740
XceI RCATGY 2 cut(s) 327, 523
XhoI CTCGAG 1 cut(s) 630
XspI CTAG 2 cut(s) 705, 895
ZrmI AGTACT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.