Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002519.1

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Forward (+)

11045 .. 11770

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002519.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgtttgtagtttctggtgtggccactgataacagagcgattggagagcttgctgggcttgcagttggctccacgattcttctgaatgtgatgtttgcagggccaattacaggagcctcaatgaacccagcaagaagcttaggccctgcaatagtatcaagccattacaaaaacttgtggatttaccttgtgtcaccaactcttggagctgtatgtggtgccctggtctacaatgttatcagatttacggataagccactgcgggagctcaccaagagtggatctttcttgaaaggcgcaggctgcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005215 GO:0005342 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0006950 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009628 GO:0012505 GO:0012506 GO:0015075 GO:0015103 GO:0015105 GO:0015129 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015711 GO:0015718 GO:0015727 GO:0015849 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030139 GO:0030659 GO:0030666 GO:0031090 GO:0031224 GO:0031226 GO:0031347 GO:0031410 GO:0031982 GO:0034220 GO:0035873 GO:0036293 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043659 GO:0043660 GO:0043661 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046685 GO:0046942 GO:0046943 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0065007 GO:0070482 GO:0071702 GO:0071944 GO:0080134 GO:0080170 GO:0097708 GO:0098588 GO:0098656 GO:0098805 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

103

Amino Acids

10.69

Weight (kDa)

9.44

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	110, 203
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	49, 138, 209, 268
AluI	AGCT	4 cut(s)	49, 138, 209, 268
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	3 cut(s)	21, 101, 142
ApeKI	GCWGC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	101, 143
AsuHPI	GGTGA	2 cut(s)	186, 262
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	101, 143
BmiI	GGNNCC	3 cut(s)	70, 115, 220
BmrFI	CCNGG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 203
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	110, 203
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	2 cut(s)	53, 127
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	23, 103, 144
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	110, 203
BsnI	GGCC	3 cut(s)	23, 103, 144
Bsp1286I	GDGCHC	2 cut(s)	223, 270
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	3 cut(s)	23, 103, 144
BspLI	GGNNCC	3 cut(s)	70, 115, 220
BspPI	GGATC	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	51, 60, 301
BstDEI	CTNAG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 59, 303
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	23, 103, 144
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	24, 257
Cac8I	GCNNGC	3 cut(s)	51, 60, 301
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	101, 143
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	270
FaiI	YATR	1 cut(s)	214
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	304
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	304
GsaI	CCCAGC	2 cut(s)	57, 131
HaeIII	GGCC	3 cut(s)	23, 103, 144
HhaI	GCGC	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	1 cut(s)	76
HphI	GGTGA	2 cut(s)	186, 262
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	84, 242
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	62, 98, 149, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 59, 303
HpyF3I	CTNAG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	281
LmnI	GCTCC	4 cut(s)	74, 113, 206, 265
LpnPI	CCDG	8 cut(s)	39, 84, 96, 141, 159, 209, 236, 285
Lsp1109I	GCAGC	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	223, 270
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	55, 59, 303
NdeII	GATC	1 cut(s)	281
NlaIV	GGNNCC	3 cut(s)	70, 115, 220
NmuCI	GTSAC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	2 cut(s)	53, 127
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	70, 115, 220
PspPI	GGNCC	2 cut(s)	101, 143
PsuI	RGATCY	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	270
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	2 cut(s)	101, 143
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	223, 270
SetI	ASST	6 cut(s)	51, 140, 189, 211, 270, 311
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	222
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	76
TscAI	CASTG	2 cut(s)	31, 264
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	31, 264
Van91I	CCANNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.