Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Forward (+)

26503519 .. 26504642

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCGAGAAAACTAATCCATGGTCCACAGAGAGGCACACACCCTTTGGTTTGGTTTGCAGCCGTCATCTGCACCATCATCTCTATTTCTGTGATCATTGCGGGCATCGTGGTTTTCGTGGGCTACATGGTCATCCACCCCAGGGTACCCTTCATCAAGGTCACCACAGCACACCTTGACAAGTTTGAAAGCGATGCGACGAGCCTGCTAGACACTGCAATCACCATTGTTGTGAGGGCTGAGAATGACAACACCAAGGCGCATGCAAGCTTCTCGGACACGAGCTTCACTCTCAGCTTCCAAGGGATGAACATAGCAAAGTTAGTGGCGTACCCTTTTGAGGTGAGGAAGAATAGTTCTGTGGATTTTAACTATGTGGTGGAGTCCTCGTCCATACCATTGAGTTCTGAGCAGGTGGATCAAGTGGACAATTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAAAGTTAGAGCAAGGTGGAGAGTACTCAGAGTAGGGCTGTTTCGATCAGTTGGGTTCTGGGGTCATTTGAACTGTCGACTTAACTTTCATGCATTGAATGGGAGCTACATATACTCACCTTGTAGCTCCAGGGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

9.75

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	426
AfaI	GTAC	3 cut(s)	147, 332, 495
AfiI	CCNNNNNNNGG	3 cut(s)	32, 142, 340
AgsI	TTSAA	5 cut(s)	188, 439, 466, 541, 568
AjnI	CCWGG	2 cut(s)	140, 599
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	5 cut(s)	270, 285, 297, 576, 597
AluI	AGCT	5 cut(s)	270, 285, 297, 576, 597
AlwI	GGATC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	154, 214, 355, 579
AvaII	GGWCC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 255, 289
BciT130I	CCWGG	2 cut(s)	142, 601
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	142, 601
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	142, 601
BmsI	GCATC	2 cut(s)	114, 184
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	1 cut(s)	583
BsaJI	CCNNGG	6 cut(s)	19, 140, 141, 255, 301, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 142, 340
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	142, 601
BseDI	CCNNGG	6 cut(s)	19, 140, 141, 255, 301, 600
BseGI	GGATG	2 cut(s)	132, 312
BseLI	CCNNNNNNNGG	3 cut(s)	32, 142, 340
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	4 cut(s)	231, 307, 399, 511
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	32, 142, 340
Bsp143I	GATC	3 cut(s)	93, 418, 515
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	4 cut(s)	232, 306, 400, 510
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	6 cut(s)	19, 140, 141, 255, 301, 600
BssMI	GATC	3 cut(s)	93, 418, 515
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	3 cut(s)	19, 255, 301
Bst2BI	CACGAG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	142, 601
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	4 cut(s)	103, 206, 264, 268
BstDEI	CTNAG	5 cut(s)	240, 293, 408, 497, 606
BstDSI	CCRYGG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	132, 312
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	96, 421, 518
BstMBI	GATC	3 cut(s)	93, 418, 515
BstNI	CCWGG	2 cut(s)	142, 601
BstNSI	RCATGY	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	140, 599
BstV1I	GCAGC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	132, 312
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	4 cut(s)	103, 206, 264, 268
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	146, 331, 494
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	4 cut(s)	20, 127, 263, 560
CviQI	GTAC	3 cut(s)	146, 331, 494
DdeI	CTNAG	5 cut(s)	240, 293, 408, 497, 606
DpnI	GATC	3 cut(s)	95, 420, 517
DpnII	GATC	3 cut(s)	93, 418, 515
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	3 cut(s)	19, 255, 301
Eco47I	GGWCC	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	140, 599
EcoT14I	CCWWGG	3 cut(s)	19, 255, 301
EcoT22I	ATGCAT	1 cut(s)	565
ErhI	CCWWGG	3 cut(s)	19, 255, 301
FaeI	CATG	4 cut(s)	23, 130, 266, 563
FaiI	YATR	9 cut(s)	21, 128, 264, 314, 375, 395, 561, 581, 583
FatI	CATG	4 cut(s)	19, 126, 262, 559
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	119, 319
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	583
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	23, 130, 266, 563
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	548
HindII	GTYRAC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	383, 450
HphI	GGTGA	4 cut(s)	154, 214, 355, 579
Hpy166II	GTNNAC	3 cut(s)	26, 427, 548
Hpy188I	TCNGA	3 cut(s)	277, 409, 500
Hpy8I	GTNNAC	3 cut(s)	26, 427, 548
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	160, 460
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4V	TGCA	5 cut(s)	59, 72, 218, 266, 563
HpyF3I	CTNAG	5 cut(s)	240, 293, 408, 497, 606
Hsp92II	CATG	4 cut(s)	23, 130, 266, 563
HspAI	GCGC	1 cut(s)	260
KpnI	GGTACC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 418, 515
LmnI	GCTCC	2 cut(s)	573, 602
LpnPI	CCDG	6 cut(s)	127, 154, 218, 398, 514, 586
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	114, 184
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	3 cut(s)	95, 420, 517
MboI	GATC	3 cut(s)	93, 418, 515
MboII	GAAGA	2 cut(s)	361, 451
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	26, 228, 334, 339, 397
Mph1103I	ATGCAT	1 cut(s)	565
MseI	TTAA	2 cut(s)	369, 552
MslI	CAYNNNNRTG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	142, 601
MvaI	CCWGG	2 cut(s)	142, 601
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	93, 418, 515
NlaIII	CATG	4 cut(s)	23, 130, 266, 563
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PaqCI	CACCTGC	1 cut(s)	403
PasI	CCCWGGG	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	140, 599
PspEI	GGTNACC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	140, 599
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	3 cut(s)	147, 332, 495
RsaNI	GTAC	3 cut(s)	146, 331, 494
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	369, 552
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	93, 418, 515
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	142, 601
SfaNI	GCATC	2 cut(s)	114, 184
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	140, 599
StyI	CCWWGG	3 cut(s)	19, 255, 301
TaaI	ACNGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	459, 514, 547
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	2 cut(s)	369, 552
Tru9I	TTAA	2 cut(s)	369, 552
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	142, 323, 548
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.