Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Reverse (-)

5735467 .. 5738106

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGGGCCGTGAACATGATGAACTAAGAAAAACCAAAAGCAACCCCAAGATATATATCATGCACTATATTAATCAAAATCTCTTTTGTTGCCATGAAATACATATTGGAGCTGAGTTCGTGGGAACATTCATCCTGATGTTTGCTGCTACCGCCGGACCAATCGTGAACCAGAAGTACAACGGAGCAGAATCCCTAATCGGAAATGCAGCATGCGCCGGACTCGGAGTGATGATCGTGATTCTTTCTACGGGCCACATCTCTGGCGCTCACCTCAACCCTTCTCTCACCATTGCCTTCGCGTGCCTGCGTCACTTCCCATGGACTCAAGTCCCTGCCTACATAGCCGCCCAGGTCTCGGCGTCCATCTGTGCTTGTTTTGCTCTCAAGGGTGTCTACCATCCGTACATGTCTGGCGGAGTCACGGTGCCTTCTGTGAGCGACGGCCAGGCTTTTGCTCTTGAGTTCATCATCACCTTCAATCTCCTGTTCGTTGTCACTGCTGTTGCCACTGATACTCGTGCGGTGGGAGAGTTGGCTGGTTTAGCTGTTGGGGCGACTGTGATGCTAAACATTCTCATAGCTGGGCCATCAAGCGGCGGTTCGATGAACCCTGTGCGAACTTTAGGCCCTGCCGTGGCCGCCGGAAACTATAGGGCATTGTGGATATACCTGGTAGCCCCCACACTCGGTGCACTGGCCGGAGCCGGAACCTACACTGCCGTGAAGCTTCAGGGCGATGAAATAGGAGCTCCGGCTCGTGAGGTCAGAAGCTTTCGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006833 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015105 GO:0015238 GO:0015250 GO:0015267 GO:0015318 GO:0015698 GO:0015700 GO:0015893 GO:0016020 GO:0016021 GO:0016328 GO:0022803 GO:0022804 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042044 GO:0042221 GO:0042493 GO:0044425 GO:0044459 GO:0044464 GO:0046685 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

262

Amino Acids

27.46

Weight (kDa)

8.54

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	37 - 239	2.6e-50	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	302
AciI	CCGC	8 cut(s)	153, 348, 417, 524, 597, 600, 642, 781
AcoI	YGGCCR	3 cut(s)	445, 639, 699
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	692
AfaI	GTAC	2 cut(s)	179, 407
AfiI	CCNNNNNNNGG	4 cut(s)	358, 596, 637, 689
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	3 cut(s)	351, 447, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	6 cut(s)	113, 548, 584, 730, 752, 774
AluI	AGCT	6 cut(s)	113, 548, 584, 730, 752, 774
Alw21I	GWGCWC	2 cut(s)	697, 754
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	693
AoxI	GGCC	7 cut(s)	7, 253, 445, 587, 628, 639, 699
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	2 cut(s)	146, 209
AseI	ATTAAT	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	218, 269
AspS9I	GGNCC	5 cut(s)	7, 158, 253, 587, 629
AsuHPI	GGTGA	3 cut(s)	263, 280, 466
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	754
BauI	CACGAG	2 cut(s)	519, 759
Bbv12I	GWGCWC	2 cut(s)	697, 754
BbvI	GCAGC	2 cut(s)	133, 221
BccI	CCATC	3 cut(s)	374, 408, 598
BceAI	ACGGC	3 cut(s)	460, 620, 707
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	3 cut(s)	353, 449, 674
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	6 cut(s)	147, 210, 348, 598, 642, 781
BlsI	GCNGC	6 cut(s)	148, 211, 349, 599, 643, 782
Bme1390I	CCNGG	3 cut(s)	353, 449, 674
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	5 cut(s)	7, 158, 253, 587, 629
BmiI	GGNNCC	3 cut(s)	429, 706, 712
BmrFI	CCNGG	3 cut(s)	353, 449, 674
BmsI	GCATC	1 cut(s)	555
BoxI	GACNNNNGTC	1 cut(s)	329
BpuEI	CTTGAG	3 cut(s)	312, 371, 482
BsaBI	GATNNNNATC	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	320, 351, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 596, 637, 689
Bse1I	ACTGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	3 cut(s)	353, 449, 674
BseDI	CCNNGG	3 cut(s)	320, 351, 636
BseGI	GGATG	2 cut(s)	132, 400
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	4 cut(s)	358, 596, 637, 689
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	2 cut(s)	133, 221
BseYI	CCCAGC	1 cut(s)	584
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	7 cut(s)	9, 255, 447, 589, 630, 641, 701
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	697, 754
BsiSI	CCGG	6 cut(s)	156, 219, 645, 702, 708, 755
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	4 cut(s)	358, 596, 637, 689
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	7 cut(s)	9, 255, 447, 589, 630, 641, 701
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	697, 754
Bsp143I	GATC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	8 cut(s)	153, 348, 417, 524, 597, 600, 642, 781
BspANI	GGCC	7 cut(s)	9, 255, 447, 589, 630, 641, 701
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	429, 706, 712
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	3 cut(s)	320, 351, 636
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	362
BssSI	CACGAG	2 cut(s)	519, 759
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	2 cut(s)	519, 759
Bst2UI	CCWGG	3 cut(s)	353, 449, 674
Bst4CI	ACNGT	2 cut(s)	427, 562
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	214, 304, 308
BstDEI	CTNAG	2 cut(s)	26, 114
BstDSI	CCRYGG	2 cut(s)	320, 636
BstF5I	GGATG	2 cut(s)	132, 400
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	218, 269
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 215, 344, 380, 545, 554, 641, 780
BstNI	CCWGG	3 cut(s)	353, 449, 674
BstNSI	RCATGY	2 cut(s)	216, 412
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	3 cut(s)	351, 447, 672
BstSFI	CTRYAG	1 cut(s)	652
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	133, 221
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	7 cut(s)	9, 255, 447, 589, 630, 641, 701
BtgI	CCRYGG	2 cut(s)	320, 636
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	132, 400
BtsI	GCAGTG	2 cut(s)	498, 717
BtsIMutI	CAGTG	4 cut(s)	498, 510, 695, 717
Cac8I	GCNNGC	3 cut(s)	214, 304, 308
CfoI	GCGC	2 cut(s)	218, 269
Cfr13I	GGNCC	5 cut(s)	7, 158, 253, 587, 629
CseI	GACGC	2 cut(s)	299, 351
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	178, 406
CviAII	CATG	6 cut(s)	17, 61, 95, 213, 321, 409
CviQI	GTAC	2 cut(s)	178, 406
DdeI	CTNAG	2 cut(s)	26, 114
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraIII	CACNNNGTG	1 cut(s)	692
EaeI	YGGCCR	3 cut(s)	445, 639, 699
EciI	GGCGGA	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	754
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	3 cut(s)	351, 447, 672
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	6 cut(s)	20, 64, 98, 216, 324, 412
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	6 cut(s)	16, 60, 94, 212, 320, 408
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	147, 210, 348, 598, 642, 781
FokI	GGATG	2 cut(s)	119, 387
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	6 cut(s)	147, 210, 348, 598, 642, 781
GlaI	GCGC	2 cut(s)	217, 268
GluI	GCNGC	6 cut(s)	147, 210, 348, 598, 642, 781
GsaI	CCCAGC	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	7 cut(s)	9, 255, 447, 589, 630, 641, 701
HapII	CCGG	6 cut(s)	156, 219, 645, 702, 708, 755
HgaI	GACGC	2 cut(s)	299, 351
HhaI	GCGC	2 cut(s)	218, 269
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	6 cut(s)	20, 64, 98, 216, 324, 412
Hin6I	GCGC	2 cut(s)	216, 267
HinP1I	GCGC	2 cut(s)	216, 267
HindIII	AAGCTT	2 cut(s)	728, 772
HinfI	GANTC	5 cut(s)	191, 222, 241, 325, 420
HpaII	CCGG	6 cut(s)	156, 219, 645, 702, 708, 755
HphI	GGTGA	3 cut(s)	263, 280, 466
Hpy166II	GTNNAC	4 cut(s)	14, 169, 397, 695
Hpy188I	TCNGA	3 cut(s)	203, 227, 770
Hpy188III	TCNNGA	5 cut(s)	136, 166, 238, 461, 761
Hpy8I	GTNNAC	4 cut(s)	14, 169, 397, 695
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	4 cut(s)	291, 307, 441, 487
HpyCH4III	ACNGT	2 cut(s)	427, 562
HpyCH4V	TGCA	3 cut(s)	64, 209, 695
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 215, 344, 380, 545, 554, 641, 780
HpyF3I	CTNAG	2 cut(s)	26, 114
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	20, 64, 98, 216, 324, 412
HspAI	GCGC	2 cut(s)	216, 267
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	5 cut(s)	110, 185, 704, 749, 757
Lsp1109I	GCAGC	2 cut(s)	133, 221
LweI	GCATC	1 cut(s)	555
MabI	ACCWGGT	1 cut(s)	672
MaeIII	GTNAC	3 cut(s)	311, 421, 496
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	697, 754
MlyI	GAGTC	3 cut(s)	216, 319, 429
MnlI	CCTC	2 cut(s)	284, 757
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	2 cut(s)	137, 722
MspI	CCGG	6 cut(s)	156, 219, 645, 702, 708, 755
MspR9I	CCNGG	3 cut(s)	353, 449, 674
MvaI	CCWGG	3 cut(s)	353, 449, 674
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	8 cut(s)	152, 215, 344, 380, 545, 554, 641, 780
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	6 cut(s)	20, 64, 98, 216, 324, 412
NlaIV	GGNNCC	3 cut(s)	429, 706, 712
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	3 cut(s)	311, 421, 496
NspI	RCATGY	2 cut(s)	216, 412
OliI	CACNNNNGTG	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	191, 241
PkrI	GCNGC	6 cut(s)	148, 211, 349, 599, 643, 782
PleI	GAGTC	3 cut(s)	216, 319, 428
PpsI	GAGTC	3 cut(s)	216, 319, 428
PscI	ACATGT	1 cut(s)	408
PshAI	GACNNNNGTC	1 cut(s)	329
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	754
Psp6I	CCWGG	3 cut(s)	351, 447, 672
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	351, 447, 672
PspN4I	GGNNCC	3 cut(s)	429, 706, 712
PspPI	GGNCC	5 cut(s)	7, 158, 253, 587, 629
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
RsaI	GTAC	2 cut(s)	179, 407
RsaNI	GTAC	2 cut(s)	178, 406
RseI	CAYNNNNRTG	2 cut(s)	137, 722
SacI	GAGCTC	1 cut(s)	754
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	6 cut(s)	147, 210, 348, 598, 642, 781
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	5 cut(s)	7, 158, 253, 587, 629
SchI	GAGTC	3 cut(s)	216, 319, 429
ScrFI	CCNGG	3 cut(s)	353, 449, 674
SduI	GDGCHC	2 cut(s)	697, 754
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	137, 722
SmlI	CTYRAG	3 cut(s)	327, 386, 461
SmoI	CTYRAG	3 cut(s)	327, 386, 461
SphI	GCATGC	1 cut(s)	216
SsiI	CCGC	8 cut(s)	153, 348, 417, 524, 597, 600, 642, 781
SstI	GAGCTC	1 cut(s)	754
StyD4I	CCNGG	3 cut(s)	351, 447, 672
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	427, 562
TaqI	TCGA	1 cut(s)	605
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	4 cut(s)	350, 600, 644, 783
TfiI	GAWTC	2 cut(s)	191, 241
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	4 cut(s)	505, 517, 702, 724
TseFI	GTSAC	3 cut(s)	311, 421, 496
TseI	GCWGC	2 cut(s)	146, 209
Tsp45I	GTSAC	3 cut(s)	311, 421, 496
TspDTI	ATGAA	6 cut(s)	36, 111, 121, 457, 623, 756
TspGWI	ACGGA	2 cut(s)	198, 393
TspRI	CASTG	4 cut(s)	505, 517, 702, 724
VneI	GTGCAC	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	72
XceI	RCATGY	2 cut(s)	216, 412
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.