Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003423

Physical Location & Seq

Genomic Coordinates Forward (+)

66316994 .. 66322389

Gene Structure 5396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG494100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCAGGAAGCAGAAGCTTGAAGAGCTTCCTTGTGCTCGATGCCACTTTTATCCGTAAGGTTGGAGCGGAGTTTGTTGGGACCTTCATTATGATATTTGCGGCAGCAGCAGCACCTATCGTGAACCAAAAGTACGATGGCGCGGAGACACTGCTAGGCAACGCAATATGTGCAGGGCTAGCAGTGATGGTAGTGGTTTTGTCCATCGGCCACATCTCCGGAGCACACCTAAACCCATCAGTCACTATCGCATTTGCAGCGTTTCAACACTTCCCATGTTTTGCTCTCAAGGGTGTTTTTCATCCATTTATGAGCGGTGGAGTTACAGTTCCTTCAGTAGGCAATGGCCAAGCTTTTGCACTCGAGTTCATTGTCACTTTCAACCTCATGTTTGTCATCATTTCTGTTGCCACAGATGCCCGCGCCGTGCGGTATGTACGGGAGTTGGCAGATTTAGCAATTGGAGCTACAGTATTGCTCGACATTCTTATAGCAGGGCAAACAACCGGCGCTTCAATGAATCCGGTCCGGACTTTGGGGCCGGCAGTGGCTGCAGGACATTATAAGTCACTGTGGATCTACTTGGTTGCCCCAACACTTGGTGCTTTAGCTGGTGCTAGCTGCTGCCCACACAGCTGCGAAGCTCTCAGAAATCCGACCAAACCAGCAGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

225

Amino Acids

23.41

Weight (kDa)

8.32

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 93	3.4e-17	Major intrinsic protein
MIP	PF00230	108 - 206	8.6e-26	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10380
fragaria_vesca	FvH4_5g10070 FvH4_6g39890 FvH4_6g39890
malus_domestica	MD06G1128200.v1.1 MD09G1135600.v1.1 MD09G1135700.v1.1 MD14G1144100.v1.1
prunus_persica	Prupe.3G191000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1 Prupe.5G138000_v2.0.a1
pyrus_communis	pycom06g11840 pycom09g05660
rosa_chinensis	RchiOBHm_Chr2g0154411 RchiOBHm_Chr2g0154421 RchiOBHm_Chr7g0188201
rosa_laevigata	RLG00000004719 RLG00000020776
rosa_multiflora	Rmu_co8400175.1_g000001 Rmu_sc0002519.1_g000004 Rmu_sc0008750.1_g000017
rosa_roxburghii	Rroxscaffold_2G00094350 Rroxscaffold_3G00266670
rosa_rugosa	Rorug07G0277000 Rorug07G0277100
rosa_samantha	Rh2AG508700 Rh2BG519900 Rh2BG520000 Rh2CG494100 Rh2DG530300 Rh7AG093400 Rh7BG094900 Rh7DG095300
rosa_wichuraiana	Rw2G041770 Rw7G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccBSI	CCGCTC	2 cut(s)	68, 315
AccII	CGCG	2 cut(s)	143, 423
AccIII	TCCGGA	2 cut(s)	218, 528
AciI	CCGC	6 cut(s)	68, 101, 143, 315, 421, 430
AclWI	GGATC	2 cut(s)	584, 665
AcoI	YGGCCR	2 cut(s)	208, 346
AcuI	CTGAAG	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	2 cut(s)	134, 438
AfiI	CCNNNNNNNGG	3 cut(s)	338, 535, 599
AgsI	TTSAA	4 cut(s)	22, 266, 382, 516
AjnI	CCWGG	1 cut(s)	4
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	8 cut(s)	18, 27, 353, 467, 611, 621, 636, 644
AluI	AGCT	8 cut(s)	18, 27, 353, 467, 611, 621, 636, 644
Alw21I	GWGCWC	2 cut(s)	39, 226
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	584, 665
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	362
Aor13HI	TCCGGA	2 cut(s)	218, 528
AoxI	GGCC	3 cut(s)	208, 346, 539
ApeKI	GCWGC	8 cut(s)	104, 107, 110, 257, 551, 621, 624, 636
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	143, 425, 512
AspS9I	GGNCC	3 cut(s)	81, 526, 539
AsuNHI	GCTAGC	2 cut(s)	178, 617
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	81, 526
BalI	TGGCCA	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	39, 226
BbvI	GCAGC	8 cut(s)	116, 119, 122, 269, 538, 608, 611, 623
BccI	CCATC	4 cut(s)	131, 181, 212, 244
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	3 cut(s)	155, 179, 618
BfmI	CTRYAG	2 cut(s)	468, 552
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	9 cut(s)	102, 105, 108, 111, 258, 552, 622, 625, 637
BlsI	GCNGC	9 cut(s)	103, 106, 109, 112, 259, 553, 623, 626, 638
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	81, 526
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	81, 526, 539
BmiI	GGNNCC	2 cut(s)	82, 540
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	31, 406
BmtI	GCTAGC	2 cut(s)	182, 621
BpuEI	CTTGAG	1 cut(s)	272
BsaWI	WCCGGW	3 cut(s)	218, 523, 528
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 535, 599
Bse118I	RCCGGY	2 cut(s)	506, 541
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	2 cut(s)	218, 528
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	338, 535, 599
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	661
BseXI	GCAGC	8 cut(s)	116, 119, 122, 269, 538, 608, 611, 623
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	143, 423
BshFI	GGCC	3 cut(s)	210, 348, 541
BsiHKAI	GWGCWC	2 cut(s)	39, 226
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	5 cut(s)	219, 507, 524, 529, 542
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	338, 535, 599
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	210, 348, 541
BsoBI	CYCGRG	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	39, 226
Bsp13I	TCCGGA	2 cut(s)	218, 528
Bsp143I	GATC	2 cut(s)	576, 670
BspACI	CCGC	6 cut(s)	68, 101, 143, 315, 421, 430
BspANI	GGCC	3 cut(s)	210, 348, 541
BspCNI	CTCAG	1 cut(s)	660
BspEI	TCCGGA	2 cut(s)	218, 528
BspFNI	CGCG	2 cut(s)	143, 423
BspLI	GGNNCC	2 cut(s)	82, 540
BspMAI	CTGCAG	1 cut(s)	556
BspOI	GCTAGC	2 cut(s)	182, 621
BspPI	GGATC	2 cut(s)	584, 665
BspQI	GCTCTTC	1 cut(s)	17
BsrBI	CCGCTC	2 cut(s)	68, 315
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	2 cut(s)	506, 541
BssAI	RCCGGY	2 cut(s)	506, 541
BssMI	GATC	2 cut(s)	576, 670
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	328, 472, 573
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	2 cut(s)	170, 551
BstC8I	GCNNGC	4 cut(s)	180, 421, 543, 619
BstDEI	CTNAG	1 cut(s)	647
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	143, 423
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	3 cut(s)	143, 425, 512
BstKTI	GATC	2 cut(s)	579, 673
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	576, 670
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	2 cut(s)	468, 552
BstUI	CGCG	2 cut(s)	143, 423
BstV1I	GCAGC	8 cut(s)	116, 119, 122, 269, 538, 608, 611, 623
BstX2I	RGATCY	2 cut(s)	576, 670
BstYI	RGATCY	2 cut(s)	576, 670
BsuRI	GGCC	3 cut(s)	210, 348, 541
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	3 cut(s)	149, 189, 552
BtsIMutI	CAGTG	4 cut(s)	149, 189, 552, 569
Cac8I	GCNNGC	4 cut(s)	180, 421, 543, 619
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	3 cut(s)	143, 425, 512
Cfr10I	RCCGGY	2 cut(s)	506, 541
Cfr13I	GGNCC	3 cut(s)	81, 526, 539
CpoI	CGGWCCG	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	133, 437
CspI	CGGWCCG	1 cut(s)	526
CviAII	CATG	3 cut(s)	276, 388, 675
CviQI	GTAC	2 cut(s)	133, 437
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	2 cut(s)	578, 672
DpnII	GATC	2 cut(s)	576, 670
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	2 cut(s)	208, 346
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	81, 526
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	3 cut(s)	279, 391, 678
FaiI	YATR	9 cut(s)	92, 169, 277, 311, 389, 435, 491, 564, 676
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	3 cut(s)	275, 387, 674
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	9 cut(s)	102, 105, 108, 111, 258, 552, 622, 625, 637
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	9 cut(s)	102, 105, 108, 111, 258, 552, 622, 625, 637
FspBI	CTAG	3 cut(s)	155, 179, 618
GlaI	GCGC	3 cut(s)	142, 424, 511
GluI	GCNGC	9 cut(s)	102, 105, 108, 111, 258, 552, 622, 625, 637
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	210, 348, 541
HapII	CCGG	5 cut(s)	219, 507, 524, 529, 542
HhaI	GCGC	3 cut(s)	143, 425, 512
Hin1II	CATG	3 cut(s)	279, 391, 678
Hin6I	GCGC	3 cut(s)	141, 423, 510
HinP1I	GCGC	3 cut(s)	141, 423, 510
HindIII	AAGCTT	2 cut(s)	16, 351
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	5 cut(s)	219, 507, 524, 529, 542
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	650, 657
Hpy188III	TCNNGA	3 cut(s)	121, 219, 529
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	94, 342
HpyCH4III	ACNGT	3 cut(s)	328, 472, 573
HpyCH4V	TGCA	4 cut(s)	173, 257, 359, 554
HpyF3I	CTNAG	1 cut(s)	647
Hsp92II	CATG	3 cut(s)	279, 391, 678
HspAI	GCGC	3 cut(s)	141, 423, 510
Kpn2I	TCCGGA	2 cut(s)	218, 528
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	576, 670
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	65, 221, 464
Lsp1109I	GCAGC	8 cut(s)	116, 119, 122, 269, 538, 608, 611, 623
LweI	GCATC	2 cut(s)	31, 406
MaeI	CTAG	3 cut(s)	155, 179, 618
MaeIII	GTNAC	4 cut(s)	241, 322, 373, 567
MalI	GATC	2 cut(s)	578, 672
MbiI	CCGCTC	2 cut(s)	68, 315
MboI	GATC	2 cut(s)	576, 670
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	576, 670
MhlI	GDGCHC	2 cut(s)	39, 226
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	459
MluNI	TGGCCA	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	395
Mox20I	TGGCCA	1 cut(s)	348
MroI	TCCGGA	2 cut(s)	218, 528
MroNI	GCCGGC	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	5 cut(s)	219, 507, 524, 529, 542
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	2 cut(s)	143, 423
NaeI	GCCGGC	1 cut(s)	543
NdeII	GATC	2 cut(s)	576, 670
NgoMIV	GCCGGC	1 cut(s)	541
NheI	GCTAGC	2 cut(s)	178, 617
NlaIII	CATG	3 cut(s)	279, 391, 678
NlaIV	GGNNCC	2 cut(s)	82, 540
NmuCI	GTSAC	3 cut(s)	241, 373, 567
PaeR7I	CTCGAG	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	17
PdiI	GCCGGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	520
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	9 cut(s)	103, 106, 109, 112, 259, 553, 623, 626, 638
PpuMI	RGGWCCY	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	82, 540
PspPI	GGNCC	3 cut(s)	81, 526, 539
PspPPI	RGGWCCY	1 cut(s)	81
PspXI	VCTCGAGB	1 cut(s)	362
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	576, 670
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	2 cut(s)	134, 438
RsaNI	GTAC	2 cut(s)	133, 437
Rsr2I	CGGWCCG	1 cut(s)	526
RsrII	CGGWCCG	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	17
SatI	GCNGC	9 cut(s)	102, 105, 108, 111, 258, 552, 622, 625, 637
Sau3AI	GATC	2 cut(s)	576, 670
Sau96I	GGNCC	3 cut(s)	81, 526, 539
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	39, 226
SfaNI	GCATC	2 cut(s)	31, 406
SfcI	CTRYAG	2 cut(s)	468, 552
Sfr274I	CTCGAG	1 cut(s)	362
SinI	GGWCC	2 cut(s)	81, 526
SlaI	CTCGAG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	287, 362
SmoI	CTYRAG	2 cut(s)	287, 362
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	6 cut(s)	68, 101, 143, 315, 421, 430
SspMI	CTAG	3 cut(s)	155, 179, 618
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	3 cut(s)	328, 472, 573
TaqI	TCGA	3 cut(s)	39, 363, 480
TasI	AATT	1 cut(s)	459
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	520
TscAI	CASTG	4 cut(s)	156, 189, 552, 576
TseFI	GTSAC	3 cut(s)	241, 373, 567
TseI	GCWGC	8 cut(s)	104, 107, 110, 257, 551, 621, 624, 636
Tsp45I	GTSAC	3 cut(s)	241, 373, 567
TspDTI	ATGAA	4 cut(s)	76, 290, 358, 533
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	156, 189, 552, 576
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	81, 526
XagI	CCTNNNNNAGG	1 cut(s)	336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	155, 179, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.