AT4G11000

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002076
Physical Location & Seq
Forward (+)
6730928 .. 6732599
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11000.1

Sequence Viewer

Length: 741 bp
ATGAAATTGCTGCGTAAAACCGTTAAAGTAAAAGCCAAGAACTTGGATGGCAAAACCGCGATGGACATACTTCAAACTCACCAATCTCCATGTTTCCCTGTAGCAAAAAAACTTCTCCGAAGTGCTAAAGAAAGACCATTTTGTGGTTCCACAACGACTCTTGCGGGATATTTGAGCAGAAATCTTTCGTTTATTGAGAAACGGAACTCTCTCTTGGGGCTGAGCAATTTGAGCATGACTAAAGACAGGTCTATAAACGCTAGTGACCCACGCAATGCAATACTTGTGGTGGCTATACTGATAGTAACAGCTACATACCAGGCTGGTCTCAGTCCTCCCGGCGGATTTTGGCAGGATACAAATGATGGCAGGTATGGTCACATGGCTGGGCAGATGACTATGCCGTTCATCTATGCCTTTTTCTTTATTGGCCTCAACGGATTTGCCTTCGTATCATCTCTATATGTGATAATAATCATCACAATTGGACTCCCCAAGTGGAAGTTACTTTACGGTTCAGTGGCGGCTTTAAGTATCGCTGCTTTAGCATCATACAGCACTATATTCCCAAGTTCATATGACGCAAATAGCTATCTCTCAGTGCTCACCTTCCTCTGTGCATACATATCGATTATATGTATCATGATGTTTGCTACATTCATGGCTTTCATTGTTGATAAACATCGTCGGTACCAAGTGGACTTCCCAGCGAGCTGCTTCAGCTCATCTCAGGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

246

Amino Acids

27.18

Weight (kDa)

9.59

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 89 - 164 8.2e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 360
Acc65I GGTACC 1 cut(s) 690
AccB1I GGYRCC 1 cut(s) 690
AccB7I CCANNNNNTGG 1 cut(s) 143
AccII CGCG 1 cut(s) 59
AciI CCGC 4 cut(s) 57, 164, 342, 524
AcuI CTGAAG 1 cut(s) 703
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 2 cut(s) 143, 341
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 311, 591, 714, 723
AluI AGCT 4 cut(s) 311, 591, 714, 723
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 3 cut(s) 10, 539, 714
Asp700I GAANNNNTTC 1 cut(s) 184
Asp718I GGTACC 1 cut(s) 690
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 71, 598
BanI GGYRCC 1 cut(s) 690
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 526, 701
BccI CCATC 3 cut(s) 41, 55, 359
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 1 cut(s) 320
BciVI GTATCC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 360
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 4 cut(s) 11, 525, 540, 715
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 4 cut(s) 12, 526, 541, 716
Bme1390I CCNGG 2 cut(s) 320, 339
BmiI GGNNCC 3 cut(s) 148, 692, 735
BmrFI CCNGG 2 cut(s) 320, 339
BmsI GCATC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 629
BsaBI GATNNNNATC 2 cut(s) 473, 681
BsaI GGTCTC 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 341
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 2 cut(s) 473, 681
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 629
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 2 cut(s) 473, 681
BseLI CCNNNNNNNGG 2 cut(s) 143, 341
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 212, 343, 612
BseXI GCAGC 2 cut(s) 526, 701
BseYI CCCAGC 2 cut(s) 386, 706
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 690
BshVI ATCGAT 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 606
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 143, 341
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 432
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 606
Bsp1720I GCTNAGC 1 cut(s) 221
BspACI CCGC 4 cut(s) 57, 164, 342, 524
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 3 cut(s) 213, 342, 611
BspDI ATCGAT 1 cut(s) 629
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 148, 692, 735
BspMI ACCTGC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 690
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 22, 515
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 4 cut(s) 221, 329, 598, 729
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 231, 545, 720
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 318, 337
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 526, 701
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 629
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 629
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 525, 606
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 712
CciI TCATGA 1 cut(s) 642
ClaI ATCGAT 1 cut(s) 629
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 691
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 6 cut(s) 90, 235, 382, 643, 661, 738
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 4 cut(s) 221, 329, 598, 729
EciI GGCGGA 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 318
FaeI CATG 6 cut(s) 93, 238, 385, 646, 664, 741
FatI CATG 6 cut(s) 89, 234, 381, 642, 660, 737
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 4 cut(s) 11, 525, 540, 715
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 11, 525, 540, 715
FspBI CTAG 1 cut(s) 261
GluI GCNGC 4 cut(s) 11, 525, 540, 715
GsaI CCCAGC 2 cut(s) 390, 710
HaeIII GGCC 1 cut(s) 432
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 590
Hin1II CATG 6 cut(s) 93, 238, 385, 646, 664, 741
HinfI GANTC 2 cut(s) 157, 489
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 71, 598
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 643, 731
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 2 cut(s) 457, 619
HpyCH4III ACNGT 2 cut(s) 22, 515
HpyCH4V TGCA 2 cut(s) 278, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 545, 720
HpyF3I CTNAG 4 cut(s) 221, 329, 598, 729
Hsp92II CATG 6 cut(s) 93, 238, 385, 646, 664, 741
KpnI GGTACC 1 cut(s) 694
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 2 cut(s) 526, 701
LweI GCATC 1 cut(s) 557
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 263, 304, 377, 504
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 3 cut(s) 5, 226, 483
MlyI GAGTC 2 cut(s) 151, 483
MnlI CCTC 3 cut(s) 345, 443, 623
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 2 cut(s) 24, 530
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 320, 339
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 231, 545, 720
NciI CCSGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 577
NlaIII CATG 6 cut(s) 93, 238, 385, 646, 664, 741
NlaIV GGNNCC 3 cut(s) 148, 692, 735
NmuCI GTSAC 2 cut(s) 263, 377
PagI TCATGA 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 4 cut(s) 12, 526, 541, 716
PleI GAGTC 2 cut(s) 151, 483
PpsI GAGTC 2 cut(s) 151, 483
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 2 cut(s) 386, 706
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 148, 692, 735
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SaqAI TTAA 2 cut(s) 24, 530
SatI GCNGC 4 cut(s) 11, 525, 540, 715
SchI GAGTC 2 cut(s) 151, 483
ScrFI CCNGG 2 cut(s) 320, 339
SduI GDGCHC 1 cut(s) 606
SetI ASST 7 cut(s) 251, 313, 374, 593, 611, 716, 725
SfaNI GCATC 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 99
Sse9I AATT 3 cut(s) 5, 226, 483
SsiI CCGC 4 cut(s) 57, 164, 342, 524
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 318, 337
TaaI ACNGT 2 cut(s) 22, 515
TaqI TCGA 1 cut(s) 629
TasI AATT 3 cut(s) 5, 226, 483
TauI GCSGC 1 cut(s) 527
Tru1I TTAA 2 cut(s) 24, 530
Tru9I TTAA 2 cut(s) 24, 530
TscAI CASTG 2 cut(s) 525, 606
TseFI GTSAC 2 cut(s) 263, 377
TseI GCWGC 3 cut(s) 10, 539, 714
Tsp45I GTSAC 2 cut(s) 263, 377
TspDTI ATGAA 5 cut(s) 17, 397, 564, 649, 658
TspGWI ACGGA 2 cut(s) 217, 453
TspRI CASTG 2 cut(s) 525, 606
Van91I CCANNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.