FvH4_7g09310

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002076
Physical Location & Seq
Forward (+)
8993993 .. 8995008
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09310.t1

Sequence Viewer

Length: 549 bp
ATGGCTAGCCCACCAGAAAAACCAGTAGAGAACCCTCCCAGGAAATCTGGGTGGAGCTGGTTCACGAGCTTCGAGTATAACAAGGAGAACGACAAACCAGGTGATGCACGTAACGTTCTGCTAGTAGTTGCGGCACTCATCACTGCGGTTACCTTCCAAGCCGGCGTCAATCCTCCGGGAGGTGTTTGGCAAGACGATGGCAATGGTCATACTGCAGGAAGAGCCATTTACGCAACTCACAAGGGGCCGTTCTATGTGTTTTTGATATCAAACACCTTGGCTCTTTCGAGTTCCATCTTCATCATTGTGATGCTCACTCATAGGTTTCCTTTCCATTTTGAGGTCATGATTGCCACACTTTCTATGATTGTGACTTACGGCTCTGCTGTGTTTGCTGTGACCCCGAACGAGTCTGTCAAGTTTCGTTACATATTGTTCACTGCTGCTCTGCCTTATGTGCTGAGGTTCTTCTATCAGATGTGCAGGAAGTATAAACATTGTGTTCGTCTTCTTAGGTCGTGTCAAAACCCATGTTCCGGTTGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

183

Amino Acids

20.35

Weight (kDa)

9.3

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 35 - 131 2.6e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 544
AciI CCGC 2 cut(s) 131, 146
AclI AACGTT 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 179, 340, 536
AjnI CCWGG 2 cut(s) 38, 97
AluBI AGCT 2 cut(s) 57, 69
AluI AGCT 2 cut(s) 57, 69
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 5
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 430
BccI CCATC 2 cut(s) 191, 302
BceAI ACGGC 2 cut(s) 232, 394
BciT130I CCWGG 2 cut(s) 40, 99
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 2 cut(s) 6, 122
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 132, 444
BlsI GCNGC 2 cut(s) 133, 445
Bme1390I CCNGG 3 cut(s) 40, 99, 177
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 40, 99, 177
BmsI GCATC 2 cut(s) 94, 300
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 38, 276
BsaWI WCCGGW 1 cut(s) 536
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 340, 536
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 40, 99
BseDI CCNNGG 2 cut(s) 38, 276
BseLI CCNNNNNNNGG 3 cut(s) 179, 340, 536
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 502
BshFI GGCC 1 cut(s) 247
BsiSI CCGG 3 cut(s) 162, 176, 537
BslI CCNNNNNNNGG 3 cut(s) 179, 340, 536
BsnI GGCC 1 cut(s) 247
BspACI CCGC 2 cut(s) 131, 146
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 453
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 38, 276
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 40, 99
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 7, 163
BstDEI CTNAG 2 cut(s) 461, 512
BstEII GGTNACC 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 545
BstMWI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
BstNI CCWGG 2 cut(s) 40, 99
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 38, 97, 175
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 500
BsuRI GGCC 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 141, 438
BtsIMutI CAGTG 2 cut(s) 141, 438
Cac8I GCNNGC 2 cut(s) 7, 163
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 97
CviAII CATG 2 cut(s) 346, 531
CviJI RGCY 9 cut(s) 5, 9, 57, 69, 161, 224, 247, 281, 381
CviKI_1 RGCY 9 cut(s) 5, 9, 57, 69, 161, 224, 247, 281, 381
DdeI CTNAG 2 cut(s) 461, 512
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 38, 97
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 349, 534
FatI CATG 2 cut(s) 345, 530
Fnu4HI GCNGC 2 cut(s) 132, 444
Fsp4HI GCNGC 2 cut(s) 132, 444
FspBI CTAG 2 cut(s) 6, 122
FspI TGCGCA 1 cut(s) 544
GlaI GCGC 1 cut(s) 544
GluI GCNGC 2 cut(s) 132, 444
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 162, 176, 537
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 349, 534
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 1 cut(s) 410
HpaII CCGG 3 cut(s) 162, 176, 537
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 63, 438
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 2 cut(s) 64, 346
Hpy8I GTNNAC 2 cut(s) 63, 438
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 109, 114
HpyCH4V TGCA 3 cut(s) 107, 215, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
HpyF3I CTNAG 2 cut(s) 461, 512
HpySE526I ACGT 2 cut(s) 109, 114
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 349, 534
HspAI GCGC 1 cut(s) 543
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 2 cut(s) 94, 300
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 2 cut(s) 6, 122
MaeII ACGT 2 cut(s) 109, 114
MaeIII GTNAC 5 cut(s) 110, 148, 370, 397, 425
MboII GAAGA 4 cut(s) 231, 289, 460, 500
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 5 cut(s) 45, 173, 183, 334, 456
MroNI GCCGGC 1 cut(s) 161
MslI CAYNNNNRTG 2 cut(s) 305, 308
MspI CCGG 3 cut(s) 162, 176, 537
MspR9I CCNGG 3 cut(s) 40, 99, 177
MvaI CCWGG 2 cut(s) 40, 99
MwoI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 177
NgoMIV GCCGGC 1 cut(s) 161
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 349, 534
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 370, 397
NsbI TGCGCA 1 cut(s) 544
PagI TCATGA 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 133, 445
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 38, 97
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 38, 97
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 245
PstI CTGCAG 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 305, 308
SapI GCTCTTC 1 cut(s) 214
SatI GCNGC 2 cut(s) 132, 444
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 40, 99, 177
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 2 cut(s) 94, 300
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 305, 308
SsiI CCGC 2 cut(s) 131, 146
SspMI CTAG 2 cut(s) 6, 122
StyD4I CCNGG 3 cut(s) 38, 97, 175
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 112, 117
TaqI TCGA 2 cut(s) 72, 287
TauI GCSGC 1 cut(s) 134
TscAI CASTG 2 cut(s) 148, 445
TseFI GTSAC 2 cut(s) 370, 397
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 370, 397
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 2 cut(s) 148, 445
XagI CCTNNNNNAGG 1 cut(s) 177
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.