Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Forward (+)

37840245 .. 37841260

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCAAGGATATCAAATTCTGGACCTTTAACTGGGTATGACTTTCCTCTTATTAATTTGCTTAATGATATTACTCGAAACATTATCAACTTAGATGGTTCAGTTTCAAACTATATTGACAATGGAACTTGGAATATTGCCAAACTGTCTCAAGTTTTGGATCCTTCTTTAGTGAAGTTAGAACCATTTCCTTTATTAATATTCCTTGTTGTGAGTTCAATGATGAATTTATTTGGGGGCCGGCTCCTAATGAAACCATATGGTGACCCCATTATTGTTGGTTCCCGGTGTATCAGAAATGCCTCCATTGTTGTGGCTGAGTACACCGCTCTCAAGGATGGCATTTTGGCTGCTATGCGCTTCAACCATATATACTCGTCTGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

7.77

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	155, 168
AcsI	RAATTY	2 cut(s)	16, 226
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	108, 219, 364
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	155, 168
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	16, 226
AseI	ATTAAT	2 cut(s)	54, 197
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	23, 238
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	2 cut(s)	89, 332
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 238
BmiI	GGNNCC	4 cut(s)	162, 239, 245, 283
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	135, 317
BpuMI	CCSGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	241, 286
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	4 cut(s)	162, 239, 245, 283
BspPI	GGATC	2 cut(s)	155, 168
BsrBI	CCGCTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	240
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	91, 318
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	23, 238
Csp6I	GTAC	1 cut(s)	322
CviJI	RGCY	4 cut(s)	240, 244, 317, 350
CviKI_1	RGCY	4 cut(s)	240, 244, 317, 350
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	91, 318
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	12
FaiI	YATR	8 cut(s)	39, 114, 259, 261, 356, 369, 371, 373
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	351
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	241, 286
HhaI	GCGC	1 cut(s)	360
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HpaII	CCGG	2 cut(s)	241, 286
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	91, 318
HspAI	GCGC	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	240
KroNI	GCCGGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	4 cut(s)	6, 18, 254, 299
Lsp1109I	GCAGC	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	3 cut(s)	16, 55, 226
MnlI	CCTC	2 cut(s)	57, 313
MroNI	GCCGGC	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	4 cut(s)	29, 54, 63, 197
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	2 cut(s)	241, 286
MspR9I	CCNGG	1 cut(s)	286
NaeI	GCCGGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	1 cut(s)	160
NgoMIV	GCCGGC	1 cut(s)	240
NlaIV	GGNNCC	4 cut(s)	162, 239, 245, 283
NmuCI	GTSAC	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	352
PshBI	ATTAAT	2 cut(s)	54, 197
PspEI	GGTNACC	1 cut(s)	263
PspN4I	GGNNCC	4 cut(s)	162, 239, 245, 283
PspPI	GGNCC	2 cut(s)	23, 238
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	4 cut(s)	29, 54, 63, 197
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	23, 238
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	1 cut(s)	28
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	150, 332
SmoI	CTYRAG	2 cut(s)	150, 332
Sse9I	AATT	3 cut(s)	16, 55, 226
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	2 cut(s)	136, 201
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	16, 55, 226
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	4 cut(s)	29, 54, 63, 197
Tru9I	TTAA	4 cut(s)	29, 54, 63, 197
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	239, 266
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	2 cut(s)	54, 197
XapI	RAATTY	2 cut(s)	16, 226
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.