Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000924.1

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Reverse (-)

92178 .. 92702

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000924.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggccgacagtaatgttgaaatggctgctctacagccaactggtgatcaaactgcttctaggtcgaaatatgatcttatgtacgatccaaaacgagacaccgcaaaagacgtaagaaatgctatgttagtcgtcgctgcccttatttctgcggcaaccttcgcagcgggaataaaccctccagggggggtttggcaaggcgatatcgaaaattccactcaacagtcttccggtaagtcggttttaggtactaatagtgcacttgcttacaaagtcttctatttcttgaatgccgtagctttctcgtcagcaaacgtggtgattagcaatcttgtatatagatttccatattatccggaaatatgggctgctatggtttctatgtcgggaacctacggtgtttcggttgctgccgtaagtccccctggagatgctttctacggtcggttcatatggtttgccatcgccgttccttatattataaggattattgttcactattggaagaaatggtgtgcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

174

Amino Acids

18.97

Weight (kDa)

8.62

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	3 cut(s)	102, 152, 167
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	2 cut(s)	83, 250
AfiI	CCNNNNNNNGG	2 cut(s)	184, 185
AgsI	TTSAA	2 cut(s)	20, 289
AjnI	CCWGG	2 cut(s)	181, 424
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	90
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	5 cut(s)	26, 137, 164, 368, 410
ApoI	RAATTY	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	56, 331
BaeGI	GKGCMC	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	219, 268
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	5 cut(s)	13, 124, 176, 355, 397
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	3 cut(s)	278, 398, 452
BciT130I	CCWGG	2 cut(s)	183, 426
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	6 cut(s)	27, 138, 153, 165, 369, 411
BlsI	GCNGC	6 cut(s)	28, 139, 154, 166, 370, 412
Bme1390I	CCNGG	2 cut(s)	183, 426
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	183, 426
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	219, 268
BpmI	CTGGAG	2 cut(s)	165, 447
BsaJI	CCNNGG	2 cut(s)	182, 424
BsaWI	WCCGGW	2 cut(s)	230, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 185
Bse1I	ACTGG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	183, 426
BseDI	CCNNGG	2 cut(s)	182, 424
BseLI	CCNNNNNNNGG	2 cut(s)	184, 185
BseNI	ACTGG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	5 cut(s)	13, 124, 176, 355, 397
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	231, 356
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	184, 185
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	46, 73, 85
BspACI	CCGC	3 cut(s)	102, 152, 167
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	182, 424
BssMI	GATC	3 cut(s)	46, 73, 85
Bst2UI	CCWGG	2 cut(s)	183, 426
Bst4CI	ACNGT	4 cut(s)	11, 225, 398, 443
BstKTI	GATC	3 cut(s)	49, 76, 88
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	3 cut(s)	46, 73, 85
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	183, 426
BstSCI	CCNGG	2 cut(s)	181, 424
BstSFI	CTRYAG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	5 cut(s)	13, 124, 176, 355, 397
BstV2I	GAAGAC	2 cut(s)	219, 268
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	82, 249
CviJI	RGCY	5 cut(s)	5, 26, 37, 299, 368
CviKI_1	RGCY	5 cut(s)	5, 26, 37, 299, 368
CviQI	GTAC	2 cut(s)	82, 249
DpnI	GATC	3 cut(s)	48, 75, 87
DpnII	GATC	3 cut(s)	46, 73, 85
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	181, 424
EcoRV	GATATC	1 cut(s)	205
FaqI	GGGAC	1 cut(s)	405
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	452
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	27, 138, 153, 165, 369, 411
Fsp4HI	GCNGC	6 cut(s)	27, 138, 153, 165, 369, 411
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	6 cut(s)	27, 138, 153, 165, 369, 411
GsuI	CTGGAG	2 cut(s)	165, 447
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	231, 356
HpaII	CCGG	2 cut(s)	231, 356
HphI	GGTGA	2 cut(s)	56, 331
Hpy166II	GTNNAC	2 cut(s)	260, 496
Hpy188III	TCNNGA	3 cut(s)	286, 356, 387
Hpy8I	GTNNAC	2 cut(s)	260, 496
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	4 cut(s)	11, 225, 398, 443
HpyCH4IV	ACGT	2 cut(s)	111, 315
HpyCH4V	TGCA	2 cut(s)	260, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	111, 315
Kpn2I	TCCGGA	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	46, 73, 85
LpnPI	CCDG	7 cut(s)	27, 168, 195, 244, 369, 411, 438
Lsp1109I	GCAGC	5 cut(s)	13, 124, 176, 355, 397
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	111, 315
MalI	GATC	3 cut(s)	48, 75, 87
MboI	GATC	3 cut(s)	46, 73, 85
MboII	GAAGA	3 cut(s)	219, 268, 517
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	2 cut(s)	211, 520
MnlI	CCTC	1 cut(s)	189
MroI	TCCGGA	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	231, 356
MspR9I	CCNGG	2 cut(s)	183, 426
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	2 cut(s)	183, 426
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	452
NdeII	GATC	3 cut(s)	46, 73, 85
NlaIV	GGNNCC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	295
PkrI	GCNGC	6 cut(s)	28, 139, 154, 166, 370, 412
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	181, 424
PspGI	CCWGG	2 cut(s)	181, 424
PspN4I	GGNNCC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	83, 250
RsaNI	GTAC	2 cut(s)	82, 249
SatI	GCNGC	6 cut(s)	27, 138, 153, 165, 369, 411
Sau3AI	GATC	3 cut(s)	46, 73, 85
ScrFI	CCNGG	2 cut(s)	183, 426
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	65, 114, 161, 250, 301, 318, 395
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	211, 520
SsiI	CCGC	3 cut(s)	102, 152, 167
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	181, 424
TaaI	ACNGT	4 cut(s)	11, 225, 398, 443
TaiI	ACGT	2 cut(s)	114, 318
TaqI	TCGA	2 cut(s)	65, 207
TasI	AATT	2 cut(s)	211, 520
TauI	GCSGC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	26, 137, 164, 368, 410
TspDTI	ATGAA	1 cut(s)	439
VneI	GTGCAC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.