Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007285.1

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Reverse (-)

102907 .. 103924

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007285.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaaccctccgggaggggtttggcaagataatgataacactcatgttgccggccagtcagtcttagcttcttacagtaaagattcgttcaaaatgttccttttctcgaacacagcagcgttttcttcgtctacaattgtgatcttgtttcttgtcagtaactttccattttatctggagatctggatagccatggccgatatgacatttacctacggcgtttcaatttcttctgtaagctccaagggaaatattaagctaggctacacgtacattgcactggctttaggtagtagcttcagcgtgggcctttggctccgctggtgtgtggggattgatgccggacgggtcttgggaggctctatgccttctacatcggatctggatgatgacggttgtggatggggctatgcggctgtgcttatgggttttggtgggcagtttgttgacgaagggattgattctcggagatggagtctcgcagcatacctgggattggattgtcccatcggtggtctagatcttttggagaggaagacggtgttgttttctgttcagcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

187

Amino Acids

20.19

Weight (kDa)

4.62

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AciI	CCGC	2 cut(s)	319, 413
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	2 cut(s)	52, 195
AcuI	CTGAAG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	14, 496, 512
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	91, 225
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	4 cut(s)	68, 240, 259, 297
AluI	AGCT	4 cut(s)	68, 240, 259, 297
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	3 cut(s)	52, 195, 307
ApeKI	GCWGC	2 cut(s)	116, 482
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	128, 494
BccI	CCATC	3 cut(s)	396, 465, 515
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	491
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	260, 518
BglII	AGATCT	2 cut(s)	180, 520
BisI	GCNGC	3 cut(s)	117, 414, 483
BlsI	GCNGC	3 cut(s)	118, 415, 484
Bme1390I	CCNGG	2 cut(s)	12, 491
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	12, 491
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	192, 243, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 496, 512
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	55, 285
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	3 cut(s)	192, 243, 490
BseGI	GGATG	2 cut(s)	391, 407
BseLI	CCNNNNNNNGG	3 cut(s)	14, 496, 512
BseMI	GCAATG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	55, 285
BseXI	GCAGC	2 cut(s)	128, 494
BshFI	GGCC	3 cut(s)	54, 197, 309
BsiSI	CCGG	3 cut(s)	11, 51, 342
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	14, 496, 512
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	54, 197, 309
Bsp143I	GATC	4 cut(s)	141, 180, 379, 520
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	319, 413
BspANI	GGCC	3 cut(s)	54, 197, 309
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	55, 285
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	192, 243, 490
BssMI	GATC	4 cut(s)	141, 180, 379, 520
BssT1I	CCWWGG	2 cut(s)	192, 243
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	3 cut(s)	77, 395, 541
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	391, 407
BstKTI	GATC	4 cut(s)	144, 183, 382, 523
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	141, 180, 379, 520
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	10, 489
BstV1I	GCAGC	2 cut(s)	128, 494
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	3 cut(s)	180, 379, 520
BstYI	RGATCY	3 cut(s)	180, 379, 520
BsuRI	GGCC	3 cut(s)	54, 197, 309
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	391, 407
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	44, 193
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	4 cut(s)	143, 182, 381, 522
DpnII	GATC	4 cut(s)	141, 180, 379, 520
EaeI	YGGCCR	2 cut(s)	52, 195
Eco130I	CCWWGG	2 cut(s)	192, 243
Eco57I	CTGAAG	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	192, 243
ErhI	CCWWGG	2 cut(s)	192, 243
FaeI	CATG	2 cut(s)	47, 196
FaiI	YATR	7 cut(s)	45, 194, 203, 365, 411, 425, 487
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	2 cut(s)	43, 192
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	117, 414, 483
FokI	GGATG	2 cut(s)	398, 414
Fsp4HI	GCNGC	3 cut(s)	117, 414, 483
FspBI	CTAG	2 cut(s)	260, 518
GluI	GCNGC	3 cut(s)	117, 414, 483
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	54, 197, 309
HapII	CCGG	3 cut(s)	11, 51, 342
Hin1II	CATG	2 cut(s)	47, 196
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	83, 461, 475
HpaII	CCGG	3 cut(s)	11, 51, 342
Hpy166II	GTNNAC	2 cut(s)	132, 448
Hpy188I	TCNGA	2 cut(s)	379, 468
Hpy188III	TCNNGA	5 cut(s)	106, 176, 184, 383, 518
Hpy8I	GTNNAC	2 cut(s)	132, 448
HpyAV	CCTTC	2 cut(s)	378, 446
HpyCH4III	ACNGT	3 cut(s)	77, 395, 541
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	47, 196
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	141, 180, 379, 520
LmnI	GCTCC	2 cut(s)	245, 321
Lsp1109I	GCAGC	2 cut(s)	128, 494
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	260, 518
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	4 cut(s)	143, 182, 381, 522
MboI	GATC	4 cut(s)	141, 180, 379, 520
MboII	GAAGA	3 cut(s)	117, 222, 547
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	3 cut(s)	180, 379, 520
MluCI	AATT	2 cut(s)	135, 225
MlyI	GAGTC	1 cut(s)	484
MnlI	CCTC	4 cut(s)	8, 18, 350, 525
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	11, 51, 342
MspR9I	CCNGG	2 cut(s)	12, 491
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	491
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	141, 180, 379, 520
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	47, 196
NlaIV	GGNNCC	1 cut(s)	317
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	83, 461
PfoI	TCCNGGA	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	118, 415, 484
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	3 cut(s)	180, 379, 520
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	117, 414, 483
Sau3AI	GATC	4 cut(s)	141, 180, 379, 520
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	12, 491
SetI	ASST	8 cut(s)	70, 215, 242, 261, 272, 292, 299, 492
SfaNI	GCATC	1 cut(s)	328
Sse9I	AATT	2 cut(s)	135, 225
SsiI	CCGC	2 cut(s)	319, 413
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	2 cut(s)	260, 518
StyD4I	CCNGG	2 cut(s)	10, 489
StyI	CCWWGG	2 cut(s)	192, 243
TaaI	ACNGT	3 cut(s)	77, 395, 541
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	135, 225
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	83, 461
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	2 cut(s)	116, 482
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	2 cut(s)	260, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.