Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Forward (+)

17865548 .. 17866970

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGAATGCCCCAAACCCACCAAACAAGTGGAATTGGTTCAAGAGTTTCCAATACGACGAAGGAAACGATTCTCCCGGCGATGCACGCAATGTTTTGCTAGTAGTTGCAGCACTGATCACTGCAGTGACCTTCCAAGCCGGTGTCAACCCTCCCGGAGGTGTTTGGCAAGACAGTCAGAATGGCCACACTGCAGGGAGAGCCATTTATGCAACTCACAAAACAGCATTCTATGTGTTCTTGATATCAAACACCTTAGCTCTTTCCACTGCTATCTTTATAATCATATCGCTTACTCACAAGTTCCCTTTCCATTTGGAGGTCTTGGTTGCCACAGTGTCTATGATCGTGACTTATGGTTCTGCAGTGTTTGCTGTGACCCCAAATGAGTCTGTCCAGTTTCGTTACATATTGACTGCAGCTGCTCTGCCTTTTATAATAAGGATTTTTGTCCAAGTTTTCAAGATGTATAAACCGAAATGTGTGTCGTATTTTAAGAATCATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

170

Amino Acids

18.78

Weight (kDa)

9.44

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	281, 437
AcoI	YGGCCR	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	158, 319
AgsI	TTSAA	2 cut(s)	43, 463
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	260, 422
AluI	AGCT	2 cut(s)	260, 422
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	3 cut(s)	110, 419, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp700I	GAANNNNTTC	2 cut(s)	38, 70
AsuC2I	CCSGG	2 cut(s)	78, 156
BalI	TGGCCA	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	122, 409, 431
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	78, 156
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	4 cut(s)	123, 192, 363, 417
BisI	GCNGC	3 cut(s)	111, 420, 423
BlsI	GCNGC	3 cut(s)	112, 421, 424
Bme1390I	CCNGG	2 cut(s)	78, 156
BmrFI	CCNGG	2 cut(s)	78, 156
BmsI	GCATC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	78, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 319
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	158, 319
BseMI	GCAATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	122, 409, 431
BshFI	GGCC	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	78, 141, 156
BslI	CCNNNNNNNGG	2 cut(s)	158, 319
BsmI	GAATGC	2 cut(s)	13, 227
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	117, 345
BspANI	GGCC	1 cut(s)	186
BspMAI	CTGCAG	4 cut(s)	127, 196, 367, 421
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	2 cut(s)	117, 345
Bst4CI	ACNGT	2 cut(s)	176, 337
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	120, 348
BstMBI	GATC	2 cut(s)	117, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 200, 209, 371
BstSCI	CCNGG	2 cut(s)	76, 154
BstSFI	CTRYAG	4 cut(s)	123, 192, 363, 417
BstV1I	GCAGC	3 cut(s)	122, 409, 431
BstXI	CCANNNNNNTGG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	96
BtsI	GCAGTG	5 cut(s)	120, 132, 189, 267, 372
BtsIMutI	CAGTG	7 cut(s)	113, 120, 132, 189, 267, 342, 372
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	140
CviJI	RGCY	5 cut(s)	140, 186, 203, 260, 422
CviKI_1	RGCY	5 cut(s)	140, 186, 203, 260, 422
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	119, 347
DpnII	GATC	2 cut(s)	117, 345
EaeI	YGGCCR	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	246
FaiI	YATR	9 cut(s)	210, 234, 281, 287, 344, 357, 410, 437, 471
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	111, 420, 423
Fsp4HI	GCNGC	3 cut(s)	111, 420, 423
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	3 cut(s)	111, 420, 423
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	3 cut(s)	78, 141, 156
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	71, 389, 499
HpaII	CCGG	3 cut(s)	78, 141, 156
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	4 cut(s)	43, 241, 349, 463
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	56, 142
HpyCH4III	ACNGT	2 cut(s)	176, 337
HpyCH4V	TGCA	7 cut(s)	86, 110, 125, 194, 212, 365, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 200, 209, 371
HpyF3I	CTNAG	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	117, 345
LpnPI	CCDG	5 cut(s)	91, 154, 169, 180, 410
Lsp1109I	GCAGC	3 cut(s)	122, 409, 431
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	4 cut(s)	127, 349, 376, 404
MalI	GATC	2 cut(s)	119, 347
MboI	GATC	2 cut(s)	117, 345
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	3 cut(s)	152, 162, 313
Mox20I	TGGCCA	1 cut(s)	186
MroXI	GAANNNNTTC	2 cut(s)	38, 70
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	78, 141, 156
MspR9I	CCNGG	2 cut(s)	78, 156
Mva1269I	GAATGC	2 cut(s)	13, 227
MwoI	GCNNNNNNNGC	4 cut(s)	87, 200, 209, 371
NciI	CCSGG	2 cut(s)	78, 156
NdeII	GATC	2 cut(s)	117, 345
NmuCI	GTSAC	3 cut(s)	127, 349, 376
OliI	CACNNNNGTG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	2 cut(s)	13, 227
PdmI	GAANNNNTTC	2 cut(s)	38, 70
PfeI	GAWTC	2 cut(s)	71, 499
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	112, 421, 424
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PsiI	TTATAA	2 cut(s)	281, 437
PstI	CTGCAG	4 cut(s)	127, 196, 367, 421
PvuII	CAGCTG	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	111, 420, 423
Sau3AI	GATC	2 cut(s)	117, 345
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	78, 156
SetI	ASST	6 cut(s)	134, 163, 257, 262, 324, 424
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	4 cut(s)	123, 192, 363, 417
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	76, 154
TaaI	ACNGT	2 cut(s)	176, 337
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	71, 499
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	7 cut(s)	120, 127, 132, 196, 274, 342, 372
TseFI	GTSAC	3 cut(s)	127, 349, 376
TseI	GCWGC	3 cut(s)	110, 419, 422
Tsp45I	GTSAC	3 cut(s)	127, 349, 376
TspRI	CASTG	7 cut(s)	120, 127, 132, 196, 274, 342, 372
XagI	CCTNNNNNAGG	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmnI	GAANNNNTTC	2 cut(s)	38, 70
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.