Rh7AG061500

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002076
Physical Location & Seq
Forward (+)
4294970 .. 4295206
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG061500.1

Sequence Viewer

Length: 237 bp
ATGGCCGATATTGCTGTTGAAATGGCTGCTTCTAACTCACAGCCATCGGGTAATCAACCTTCTAGGTCAAGATACGATCTGACGTATAAGCGAGGACGAGACTCGGAAAGTGACGTAAGAAATACCATGTTGGTGGTGGCTGCCCTAATTACAGCCGCAACCTTTGCAGCCGGCATGAACCCACCTGGGTTTGGCAAGAAGATAACGTTTCTCATAAACAGTATTCGGGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

78

Amino Acids

8.37

Weight (kDa)

9.81

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 37 - 63 1.1e-06 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclI AACGTT 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 93
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 26, 140, 167
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
BbvI GCAGC 3 cut(s) 13, 127, 179
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 27, 141, 156, 168
BlsI GCNGC 4 cut(s) 28, 142, 157, 169
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 170
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 13, 127, 179
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 11, 164
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 13, 127, 179
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 170
CviAII CATG 2 cut(s) 127, 175
CviJI RGCY 6 cut(s) 5, 26, 43, 140, 155, 170
CviKI_1 RGCY 6 cut(s) 5, 26, 43, 140, 155, 170
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 184
FaeI CATG 2 cut(s) 130, 178
FaiI YATR 4 cut(s) 87, 128, 176, 215
FatI CATG 2 cut(s) 126, 174
Fnu4HI GCNGC 4 cut(s) 27, 141, 156, 168
Fsp4HI GCNGC 4 cut(s) 27, 141, 156, 168
FspBI CTAG 1 cut(s) 63
GluI GCNGC 4 cut(s) 27, 141, 156, 168
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 130, 178
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 81, 106
Hpy188III TCNNGA 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 3 cut(s) 83, 114, 206
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 164
HpySE526I ACGT 3 cut(s) 83, 114, 206
Hsp92II CATG 2 cut(s) 130, 178
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 171, 184, 198
Lsp1109I GCAGC 3 cut(s) 13, 127, 179
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 83, 114, 206
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 211
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 11, 164
NaeI GCCGGC 1 cut(s) 172
NdeII GATC 1 cut(s) 76
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 130, 178
NmuCI GTSAC 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 172
PkrI GCNGC 4 cut(s) 28, 142, 157, 169
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 4 cut(s) 27, 141, 156, 168
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 186
SetI ASST 7 cut(s) 61, 68, 86, 117, 164, 187, 209
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 3 cut(s) 86, 117, 209
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 158
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 3 cut(s) 26, 140, 167
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.