Rh2DG388200

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002076
Physical Location & Seq
Forward (+)
56237526 .. 56245235
7710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG388200.1

Sequence Viewer

Length: 549 bp
ATGTCTGTCTATTTGACCCTAAGCAAACTAACTTGTTTTTATAGAACAAAGGGTAAGAATTGTTTTCCCAAGAGAAGGGGAGAGAGAGAAGCACGCGAGAAACCTAGGGTTTTACAGAGTCATTTGGACCGAGGGTCTTTTCCCTTCATTTTCTCACTCGGGTTTCGCGAAAGAGAGAAAGACGAAATCCCAAGAAGAAACAAGAGTCAAGACAAAGAAACAACCTTTGCGGCTGGAATGAACCCTCCGGGAGGGGTTTGGCAAGATAATGATAACACTCATGTTGCCGGCCAGTCAGTCTTAGCTTCTTACAGTAAAGATTCGTTCAAAATGTTCCTTTTCTCGAACACAGCAGCGTTTTCTTCGTCTACAATTGTGATCTTGTTTCTTGTCAGTAACTTTCCATTTTATCTGGAGATCTGGATAGCCATGGCCGATATGACATTTACCTACGGCGTTTCAATTTCTTCTGTAAGCTCCAAGGGAAATATTAAGCCAGGCTACACGTACATTGCACTGGCTTTAGGTAGTAGGTACCCTATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

182

Amino Acids

20.58

Weight (kDa)

9.66

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 75 - 134 4.3e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 534
AccI GTMKAC 1 cut(s) 368
AccII CGCG 2 cut(s) 96, 168
AciI CCGC 1 cut(s) 230
AcoI YGGCCR 2 cut(s) 289, 432
AfaI GTAC 2 cut(s) 509, 536
AfiI CCNNNNNNNGG 2 cut(s) 75, 251
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 2 cut(s) 328, 462
AhdI GACNNNNNGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 2 cut(s) 305, 477
AluI AGCT 2 cut(s) 305, 477
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 289, 432
ApeKI GCWGC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 534
AspA2I CCTAGG 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 104
BanI GGYRCC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 417
BisI GCNGC 2 cut(s) 231, 354
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 2 cut(s) 232, 355
Bme1390I CCNGG 2 cut(s) 249, 498
Bme18I GGWCC 1 cut(s) 127
BmeRI GACNNNNNGTC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 536
BmrFI CCNGG 2 cut(s) 249, 498
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 507
BsaJI CCNNGG 4 cut(s) 104, 130, 429, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 251
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 292, 522
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 4 cut(s) 104, 130, 429, 480
BseLI CCNNNNNNNGG 2 cut(s) 75, 251
BseMI GCAATG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 292, 522
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 96, 168
BshFI GGCC 2 cut(s) 291, 434
BshNI GGYRCC 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 248, 288
BslI CCNNNNNNNGG 2 cut(s) 75, 251
BsnI GGCC 2 cut(s) 291, 434
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 2 cut(s) 378, 417
Bsp19I CCATGG 1 cut(s) 429
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 291, 434
BspFNI CGCG 2 cut(s) 96, 168
BspLI GGNNCC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 292, 522
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 4 cut(s) 104, 130, 429, 480
BssMI GATC 2 cut(s) 378, 417
BssT1I CCWWGG 3 cut(s) 104, 429, 480
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 94, 289
BstDEI CTNAG 2 cut(s) 20, 301
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 249
BstFNI CGCG 2 cut(s) 96, 168
BstKTI GATC 2 cut(s) 381, 420
BstMBI GATC 2 cut(s) 378, 417
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 2 cut(s) 247, 496
BstUI CGCG 2 cut(s) 96, 168
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 2 cut(s) 291, 434
BtgI CCRYGG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 515
BtuMI TCGCGA 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 94, 289
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 508, 535
CviAII CATG 2 cut(s) 281, 430
CviJI RGCY 9 cut(s) 233, 291, 305, 428, 434, 477, 496, 501, 521
CviKI_1 RGCY 9 cut(s) 233, 291, 305, 428, 434, 477, 496, 501, 521
CviQI GTAC 2 cut(s) 508, 535
DdeI CTNAG 2 cut(s) 20, 301
DpnI GATC 2 cut(s) 380, 419
DpnII GATC 2 cut(s) 378, 417
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 2 cut(s) 289, 432
Eam1105I GACNNNNNGTC 1 cut(s) 133
Eco130I CCWWGG 3 cut(s) 104, 429, 480
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 3 cut(s) 104, 429, 480
ErhI CCWWGG 3 cut(s) 104, 429, 480
FaeI CATG 2 cut(s) 284, 433
FaiI YATR 5 cut(s) 42, 282, 431, 440, 542
FatI CATG 2 cut(s) 280, 429
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 231, 354
Fsp4HI GCNGC 2 cut(s) 231, 354
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 231, 354
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 291, 434
HapII CCGG 2 cut(s) 248, 288
Hin1II CATG 2 cut(s) 284, 433
HinfI GANTC 3 cut(s) 118, 205, 320
HpaII CCGG 2 cut(s) 248, 288
Hpy166II GTNNAC 1 cut(s) 369
Hpy188III TCNNGA 6 cut(s) 167, 209, 343, 413, 421, 546
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 2 cut(s) 69, 154
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 20, 301
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 2 cut(s) 284, 433
KpnI GGTACC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 378, 417
LmnI GCTCC 1 cut(s) 482
LpnPI CCDG 9 cut(s) 219, 261, 301, 305, 398, 406, 483, 503, 510
Lsp1109I GCAGC 1 cut(s) 365
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 380, 419
MboI GATC 2 cut(s) 378, 417
MboII GAAGA 3 cut(s) 207, 354, 459
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 417
MluCI AATT 3 cut(s) 58, 372, 462
MlyI GAGTC 2 cut(s) 127, 214
MnlI CCTC 3 cut(s) 125, 245, 255
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 1 cut(s) 492
MspI CCGG 2 cut(s) 248, 288
MspR9I CCNGG 2 cut(s) 249, 498
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 2 cut(s) 96, 168
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 378, 417
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 284, 433
NlaIV GGNNCC 1 cut(s) 536
NruI TCGCGA 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 2 cut(s) 232, 355
PleI GAGTC 2 cut(s) 126, 213
PpsI GAGTC 2 cut(s) 126, 213
Ppu21I YACGTR 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 417
RruI TCGCGA 1 cut(s) 168
RsaI GTAC 2 cut(s) 509, 536
RsaNI GTAC 2 cut(s) 508, 535
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 231, 354
Sau3AI GATC 2 cut(s) 378, 417
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 2 cut(s) 127, 214
ScrFI CCNGG 2 cut(s) 249, 498
SetI ASST 8 cut(s) 106, 227, 307, 452, 479, 509, 529, 536
SinI GGWCC 1 cut(s) 127
Sse9I AATT 3 cut(s) 58, 372, 462
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 247, 496
StyI CCWWGG 3 cut(s) 104, 429, 480
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 344
TaqII GACCGA 1 cut(s) 144
TasI AATT 3 cut(s) 58, 372, 462
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 522
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 136, 254
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 249
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.