Rorug06G0460900

protein ubiquitination

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
58700257 .. 58703677
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0460900.1

Sequence Viewer

Length: 1155 bp
ATGTCGACGGCGGAGATGGAGCAACTGACCTCGGGAGCGAGCAACCGCATCATCCCGCTCCTCAAGGCCCTGAGGACCTCCCTCCTCTTCGTCCACACCGTCTTCCTCTCGCTGCTTCTCTTCGTCTTCCGCCGCCCCCGCCGCCGCTGCCTGTCGGAATCGCTCACGGAGTCGACGGCCAAGAAGCGGAAATCGGCGTGGAGGAGAGAGGAGGAGGACACTTTCAGACGGAGAGCTTTGGCCGAGGAACTCCACACCGGAGACGGAGACTGCCGGTTCCGTCGCGACACCTTCTTGTTCTACGGTGTAAGGCAAAGCGCCTTATTCTGCCGCTCATGGTTTCCGGTCTCCGGTAATCCAAGGGCTATTTTGGTCATCATACATGGGCTGAATGAACACAGTGGAAGATATGCTGATTTTGCGAGGCAACTAACCTCATGCAACTTTGGGGTTTATGCAATGGACTGGATAGGTCATGGTGGCAGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGCTGATACTGGGGATTTCTTGGAAAAGATTAGATTAGAGAACCCTGGAGCACCGTGCTTCCTCTTTGGTCACTCAACTGGAGGAGCTGTGGTTTTGAAGGCGGCAACCTATGCTAAAATTGAAGAAAAGGTGGAAGGTATAATACTGACCTCACCAGCTTTGCGTGTTAAGCCAGCACATCCAATTGTTGGGGCTGTGGCTCCACTTGTTTCTTTGGTCGCTCCCAAGTTCCAGTTTAAAGGTGCAAACAAAAGGGGAATTCCAGTATCTAGAGATCCTGCAGCACTGGTAGCCAAGTATTCCGATCCCCTGGTCTATACAGGGCCAATAAGGGTCAGAACAGGCTATGAGATATTGCGTATCTCTGCTCACTTGACGAGAAACTTTAAGTTTGTGACTGTACCCTTCTTTGTTCTTCATGGGACTGCTGATAGAGTTACGGATCCTCTGGCCTCTCAGGATCTGTACACAGAGGCAGCGTCTGAGTTCAAAGACATAAAGCTCTATGATGGTTTCTTGCATGATCTCCTGTTTGAGCCTGAACGCGAAGAGATTGCGCAGGATATAATTGACTGGATGGAGAAGCGATTAGGTGCTGGCCTTGAAGACGTTACCAACTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

42.96

Weight (kDa)

8.71

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 119 - 357 5.1e-75 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 123 - 338 6.3e-15 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 124 - 331 6.3e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1086
AccB7I CCANNNNNTGG 1 cut(s) 716
AccBSI CCGCTC 2 cut(s) 58, 333
AccI GTMKAC 2 cut(s) 5, 173
AccII CGCG 2 cut(s) 285, 1074
AclWI GGATC 5 cut(s) 797, 827, 965, 978, 996
AcoI YGGCCR 2 cut(s) 177, 240
AcsI RAATTY 1 cut(s) 786
AfaI GTAC 2 cut(s) 930, 995
AfiI CCNNNNNNNGG 3 cut(s) 186, 350, 716
AgsI TTSAA 4 cut(s) 625, 650, 1018, 1133
AjnI CCWGG 2 cut(s) 571, 837
AluBI AGCT 4 cut(s) 236, 614, 686, 1030
AluI AGCT 4 cut(s) 236, 614, 686, 1030
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 3 cut(s) 255, 261, 352
AlwI GGATC 5 cut(s) 797, 827, 965, 978, 996
AlwNI CAGNNNCTG 2 cut(s) 991, 1010
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 6 cut(s) 66, 177, 240, 851, 978, 1126
ApeKI GCWGC 4 cut(s) 112, 147, 809, 1004
ApoI RAATTY 1 cut(s) 786
AspLEI GCGC 2 cut(s) 320, 1087
AspS9I GGNCC 3 cut(s) 67, 75, 851
AsuHPI GGTGA 1 cut(s) 672
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 71
BamHI GGATCC 1 cut(s) 970
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbsI GAAGAC 3 cut(s) 94, 118, 1140
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 99, 134, 821, 1016
BccI CCATC 4 cut(s) 10, 482, 1031, 1099
BceAI ACGGC 2 cut(s) 24, 192
BcgI CGANNNNNNTGC 2 cut(s) 1064, 1098
BciT130I CCWGG 2 cut(s) 573, 839
BcoDI GTCTC 3 cut(s) 255, 261, 352
BfaI CTAG 1 cut(s) 798
BfmI CTRYAG 1 cut(s) 807
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 9 cut(s) 113, 133, 142, 145, 148, 331, 630, 810, 1005
BlsI GCNGC 9 cut(s) 114, 134, 143, 146, 149, 332, 631, 811, 1006
Bme1390I CCNGG 2 cut(s) 573, 839
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 67, 75, 851
BmiI GGNNCC 3 cut(s) 278, 729, 972
BmrFI CCNGG 2 cut(s) 573, 839
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 3 cut(s) 94, 118, 1140
BpmI CTGGAG 2 cut(s) 594, 627
BpuEI CTTGAG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 30, 243, 359, 571, 837
BsaWI WCCGGW 3 cut(s) 257, 343, 350
BsaXI ACNNNNNCTCC 4 cut(s) 600, 603, 630, 633
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 350, 716
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 7 cut(s) 470, 541, 610, 760, 791, 819, 1106
Bse21I CCTNAGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 2 cut(s) 573, 839
BseDI CCNNGG 5 cut(s) 30, 243, 359, 571, 837
BseGI GGATG 3 cut(s) 51, 706, 1110
BseLI CCNNNNNNNGG 3 cut(s) 186, 350, 716
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 62, 998, 1002
BseNI ACTGG 7 cut(s) 470, 541, 610, 760, 791, 819, 1106
BseRI GAGGAG 6 cut(s) 50, 74, 217, 224, 227, 624
BseXI GCAGC 4 cut(s) 99, 134, 821, 1016
Bsh1236I CGCG 2 cut(s) 285, 1074
BshFI GGCC 6 cut(s) 68, 179, 242, 853, 980, 1128
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 4 cut(s) 258, 274, 344, 351
BslFI GGGAC 1 cut(s) 964
BslI CCNNNNNNNGG 3 cut(s) 186, 350, 716
BsmAI GTCTC 3 cut(s) 255, 261, 352
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 964
BsnI GGCC 6 cut(s) 68, 179, 242, 853, 980, 1128
Bso31I GGTCTC 1 cut(s) 352
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 5 cut(s) 802, 832, 970, 988, 1051
Bsp68I TCGCGA 1 cut(s) 285
BspANI GGCC 6 cut(s) 68, 179, 242, 853, 980, 1128
BspCNI CTCAG 3 cut(s) 63, 997, 1003
BspFNI CGCG 2 cut(s) 285, 1074
BspLI GGNNCC 3 cut(s) 278, 729, 972
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 5 cut(s) 797, 827, 965, 978, 996
BspTNI GGTCTC 1 cut(s) 352
BsrBI CCGCTC 2 cut(s) 58, 333
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 993
BsrI ACTGG 7 cut(s) 470, 541, 610, 760, 791, 819, 1106
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 5 cut(s) 30, 243, 359, 571, 837
BssMI GATC 5 cut(s) 802, 832, 970, 988, 1051
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 573, 839
Bst4CI ACNGT 5 cut(s) 100, 305, 401, 582, 928
Bst6I CTCTTC 3 cut(s) 92, 125, 1071
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 993
BstC8I GCNNGC 3 cut(s) 40, 702, 1126
BstDEI CTNAG 3 cut(s) 71, 984, 1011
BstF5I GGATG 3 cut(s) 51, 706, 1110
BstFNI CGCG 2 cut(s) 285, 1074
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 320, 1087
BstKTI GATC 5 cut(s) 805, 835, 973, 991, 1054
BstMAI GTCTC 3 cut(s) 255, 261, 352
BstMBI GATC 5 cut(s) 802, 832, 970, 988, 1051
BstMWI GCNNNNNNNGC 7 cut(s) 138, 141, 147, 419, 638, 697, 818
BstNI CCWGG 2 cut(s) 573, 839
BstSCI CCNGG 2 cut(s) 571, 837
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 2 cut(s) 285, 1074
BstV1I GCAGC 4 cut(s) 99, 134, 821, 1016
BstV2I GAAGAC 3 cut(s) 94, 118, 1140
BstX2I RGATCY 3 cut(s) 802, 970, 988
BstYI RGATCY 3 cut(s) 802, 970, 988
Bsu36I CCTNAGG 1 cut(s) 71
BsuRI GGCC 6 cut(s) 68, 179, 242, 853, 980, 1128
BtsCI GGATG 3 cut(s) 51, 706, 1110
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 406, 490, 812
BtuMI TCGCGA 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 40, 702, 1126
CaiI CAGNNNCTG 2 cut(s) 991, 1010
CfoI GCGC 2 cut(s) 320, 1087
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 67, 75, 851
CseI GACGC 1 cut(s) 996
Csp6I GTAC 2 cut(s) 929, 994
CviAII CATG 8 cut(s) 336, 383, 438, 476, 497, 521, 947, 1049
CviQI GTAC 2 cut(s) 929, 994
DdeI CTNAG 3 cut(s) 71, 984, 1011
DpnI GATC 5 cut(s) 804, 834, 972, 990, 1053
DpnII GATC 5 cut(s) 802, 832, 970, 988, 1051
DraI TTTAAA 1 cut(s) 766
EaeI YGGCCR 2 cut(s) 177, 240
Eam1104I CTCTTC 3 cut(s) 92, 125, 1071
EarI CTCTTC 3 cut(s) 92, 125, 1071
EciI GGCGGA 2 cut(s) 26, 119
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 31
EcoO109I RGGNCCY 2 cut(s) 67, 75
EcoRI GAATTC 1 cut(s) 786
EcoRII CCWGG 2 cut(s) 571, 837
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 8 cut(s) 339, 386, 441, 479, 500, 524, 950, 1052
FaqI GGGAC 1 cut(s) 964
FatI CATG 8 cut(s) 335, 382, 437, 475, 496, 520, 946, 1048
FauI CCCGC 2 cut(s) 63, 146
FblI GTMKAC 2 cut(s) 5, 173
Fnu4HI GCNGC 9 cut(s) 113, 133, 142, 145, 148, 331, 630, 810, 1005
FokI GGATG 3 cut(s) 38, 693, 1117
Fsp4HI GCNGC 9 cut(s) 113, 133, 142, 145, 148, 331, 630, 810, 1005
FspBI CTAG 1 cut(s) 798
FspI TGCGCA 1 cut(s) 1086
GlaI GCGC 2 cut(s) 319, 1086
GluI GCNGC 9 cut(s) 113, 133, 142, 145, 148, 331, 630, 810, 1005
GsuI CTGGAG 2 cut(s) 594, 627
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 6 cut(s) 68, 179, 242, 853, 980, 1128
HapII CCGG 4 cut(s) 258, 274, 344, 351
HgaI GACGC 1 cut(s) 996
HhaI GCGC 2 cut(s) 320, 1087
Hin1II CATG 8 cut(s) 339, 386, 441, 479, 500, 524, 950, 1052
Hin6I GCGC 2 cut(s) 318, 1085
HinP1I GCGC 2 cut(s) 318, 1085
HincII GTYRAC 2 cut(s) 6, 174
HindII GTYRAC 2 cut(s) 6, 174
HinfI GANTC 2 cut(s) 158, 170
HpaII CCGG 4 cut(s) 258, 274, 344, 351
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 4 cut(s) 6, 94, 174, 996
Hpy188I TCNGA 5 cut(s) 157, 227, 832, 866, 1012
Hpy188III TCNNGA 4 cut(s) 33, 284, 798, 986
Hpy8I GTNNAC 4 cut(s) 6, 94, 174, 996
Hpy99I CGWCG 3 cut(s) 10, 178, 285
HpyAV CCTTC 5 cut(s) 301, 519, 619, 656, 943
HpyCH4III ACNGT 5 cut(s) 100, 305, 401, 582, 928
HpyCH4IV ACGT 1 cut(s) 1137
HpyCH4V TGCA 7 cut(s) 441, 458, 496, 773, 809, 1048, 1151
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 141, 147, 419, 638, 697, 818
HpyF3I CTNAG 3 cut(s) 71, 984, 1011
HpySE526I ACGT 1 cut(s) 1137
Hsp92II CATG 8 cut(s) 339, 386, 441, 479, 500, 524, 950, 1052
HspAI GCGC 2 cut(s) 318, 1085
Kzo9I GATC 5 cut(s) 802, 832, 970, 988, 1051
LmnI GCTCC 7 cut(s) 19, 35, 63, 575, 611, 733, 754
Lsp1109I GCAGC 4 cut(s) 99, 134, 821, 1016
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 798
MaeII ACGT 1 cut(s) 1137
MaeIII GTNAC 4 cut(s) 596, 922, 964, 1138
MalI GATC 5 cut(s) 804, 834, 972, 990, 1053
MbiI CCGCTC 2 cut(s) 58, 333
MboI GATC 5 cut(s) 802, 832, 970, 988, 1051
MboII GAAGA 9 cut(s) 79, 94, 112, 118, 417, 662, 935, 1088, 1145
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 3 cut(s) 802, 970, 988
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 4 cut(s) 645, 711, 786, 1095
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 135
MseI TTAA 3 cut(s) 696, 765, 915
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 4 cut(s) 258, 274, 344, 351
MspR9I CCNGG 2 cut(s) 573, 839
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 2 cut(s) 573, 839
MvnI CGCG 2 cut(s) 285, 1074
MwoI GCNNNNNNNGC 7 cut(s) 138, 141, 147, 419, 638, 697, 818
NdeII GATC 5 cut(s) 802, 832, 970, 988, 1051
NlaIII CATG 8 cut(s) 339, 386, 441, 479, 500, 524, 950, 1052
NlaIV GGNNCC 3 cut(s) 278, 729, 972
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 596, 922
NruI TCGCGA 1 cut(s) 285
NsbI TGCGCA 1 cut(s) 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 9 cut(s) 114, 134, 143, 146, 149, 332, 631, 811, 1006
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 571, 837
PspGI CCWGG 2 cut(s) 571, 837
PspN4I GGNNCC 3 cut(s) 278, 729, 972
PspPI GGNCC 3 cut(s) 67, 75, 851
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 2 cut(s) 991, 1010
PsuI RGATCY 3 cut(s) 802, 970, 988
RruI TCGCGA 1 cut(s) 285
RsaI GTAC 2 cut(s) 930, 995
RsaNI GTAC 2 cut(s) 929, 994
RseI CAYNNNNRTG 1 cut(s) 501
SalI GTCGAC 2 cut(s) 4, 172
SaqAI TTAA 3 cut(s) 696, 765, 915
SatI GCNGC 9 cut(s) 113, 133, 142, 145, 148, 331, 630, 810, 1005
Sau3AI GATC 5 cut(s) 802, 832, 970, 988, 1051
Sau96I GGNCC 3 cut(s) 67, 75, 851
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 573, 839
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 645, 711, 786, 1095
SspMI CTAG 1 cut(s) 798
StyD4I CCNGG 2 cut(s) 571, 837
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 5 cut(s) 100, 305, 401, 582, 928
TaiI ACGT 1 cut(s) 1140
TaqI TCGA 2 cut(s) 5, 173
TasI AATT 4 cut(s) 645, 711, 786, 1095
TatI WGTACW 1 cut(s) 993
TauI GCSGC 5 cut(s) 135, 144, 147, 333, 632
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 696, 765, 915
Tru9I TTAA 3 cut(s) 696, 765, 915
TscAI CASTG 3 cut(s) 406, 490, 819
TseFI GTSAC 2 cut(s) 596, 922
TseI GCWGC 4 cut(s) 112, 147, 809, 1004
Tsp45I GTSAC 2 cut(s) 596, 922
TspDTI ATGAA 2 cut(s) 408, 935
TspGWI ACGGA 5 cut(s) 182, 244, 269, 279, 983
TspRI CASTG 3 cut(s) 406, 490, 819
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 1 cut(s) 786
XbaI TCTAGA 1 cut(s) 797
XmiI GTMKAC 2 cut(s) 5, 173
XspI CTAG 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.