Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013966.1

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Forward (+)

2073 .. 4230

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013966.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggccgatattgctgttgaaatggctgcttctaactcacagccatcgggtaatcaaccttctaggtcaagatacgatctgacgtataagcgaggacgagactcggaaagtgacgtaagaaataccatgttggtggtggctgccctaattacagccgcaacctttgcagccggcatgaacccacctgggtttggcaagacgataacgtttctcataaacagtattcggcctacggtgcttcggttgccgcagtatgtcctcccggagatcatttctaccgcggttgccatagcctttccctatatggtgcggattattgctgatttgtggaacaaatggcgcaaggtcaagttcgacagatcactgagaccatctcagaatgattcagaggatgatctttgtattgatggaaagcttcgaatgtctagtttccagatctttttacggcttgtcaatatcatttttctagaagaagttatggccaatttagtacaagaatgtcaggctgcgagtgaatctgaggttggacgggaatttatgtttcgaagcccaaatcacactgagaagcccaaggacgattttgtgcttcatattccgacttatgatggacaaacggcacgatatgaatggttggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

5.8

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AciI	CCGC	5 cut(s)	156, 248, 279, 281, 310
AclI	AACGTT	1 cut(s)	206
AcoI	YGGCCR	2 cut(s)	3, 480
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	93, 361
AoxI	GGCC	3 cut(s)	3, 227, 480
ApeKI	GCWGC	4 cut(s)	26, 140, 167, 506
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	263
AsuII	TTCGAA	2 cut(s)	418, 544
BalI	TGGCCA	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbvI	GCAGC	4 cut(s)	13, 127, 179, 493
BccI	CCATC	4 cut(s)	52, 379, 401, 599
BceAI	ACGGC	2 cut(s)	461, 630
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	93, 361
BfaI	CTAG	3 cut(s)	63, 426, 467
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	6 cut(s)	27, 141, 156, 168, 248, 507
BlsI	GCNGC	6 cut(s)	28, 142, 157, 169, 249, 508
Bme1390I	CCNGG	2 cut(s)	186, 263
BmrFI	CCNGG	2 cut(s)	186, 263
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu14I	TTCGAA	2 cut(s)	418, 544
BpuMI	CCSGG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	185, 279, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	185, 279, 570
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	4 cut(s)	356, 389, 510, 552
BseXI	GCAGC	4 cut(s)	13, 127, 179, 493
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	5, 229, 482
BsiSI	CCGG	2 cut(s)	171, 263
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	93, 361
BsnI	GGCC	3 cut(s)	5, 229, 482
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	2 cut(s)	418, 544
Bsp143I	GATC	5 cut(s)	76, 267, 359, 394, 435
BspACI	CCGC	5 cut(s)	156, 248, 279, 281, 310
BspANI	GGCC	3 cut(s)	5, 229, 482
BspCNI	CTCAG	4 cut(s)	357, 388, 511, 553
BspFNI	CGCG	1 cut(s)	281
BspT104I	TTCGAA	2 cut(s)	418, 544
BspTNI	GGTCTC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	185, 279, 570
BssMI	GATC	5 cut(s)	76, 267, 359, 394, 435
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	221, 235
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBI	TTCGAA	2 cut(s)	418, 544
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	365, 375, 519, 561
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	5 cut(s)	79, 270, 362, 397, 438
BstMAI	GTCTC	2 cut(s)	93, 361
BstMBI	GATC	5 cut(s)	76, 267, 359, 394, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 164, 235, 244
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	184, 261
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	4 cut(s)	13, 127, 179, 493
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	5, 229, 482
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	362, 558
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	2 cut(s)	127, 175
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	4 cut(s)	365, 375, 519, 561
DpnI	GATC	5 cut(s)	78, 269, 361, 396, 437
DpnII	GATC	5 cut(s)	76, 267, 359, 394, 435
EaeI	YGGCCR	2 cut(s)	3, 480
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	2 cut(s)	130, 178
FatI	CATG	2 cut(s)	126, 174
Fnu4HI	GCNGC	6 cut(s)	27, 141, 156, 168, 248, 507
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	6 cut(s)	27, 141, 156, 168, 248, 507
FspBI	CTAG	3 cut(s)	63, 426, 467
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	6 cut(s)	27, 141, 156, 168, 248, 507
HaeIII	GGCC	3 cut(s)	5, 229, 482
HapII	CCGG	2 cut(s)	171, 263
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	130, 178
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	101, 383, 515
HpaII	CCGG	2 cut(s)	171, 263
Hpy188I	TCNGA	6 cut(s)	81, 106, 378, 388, 520, 597
Hpy188III	TCNNGA	3 cut(s)	69, 433, 467
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	221, 235
HpyCH4IV	ACGT	3 cut(s)	83, 114, 206
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 164, 235, 244
HpyF3I	CTNAG	4 cut(s)	365, 375, 519, 561
HpySE526I	ACGT	3 cut(s)	83, 114, 206
Hsp92II	CATG	2 cut(s)	130, 178
HspAI	GCGC	1 cut(s)	340
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	76, 267, 359, 394, 435
LpnPI	CCDG	6 cut(s)	171, 184, 198, 276, 446, 488
Lsp1109I	GCAGC	4 cut(s)	13, 127, 179, 493
MaeI	CTAG	3 cut(s)	63, 426, 467
MaeII	ACGT	3 cut(s)	83, 114, 206
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	5 cut(s)	78, 269, 361, 396, 437
MboI	GATC	5 cut(s)	76, 267, 359, 394, 435
MboII	GAAGA	1 cut(s)	482
MflI	RGATCY	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	3 cut(s)	147, 484, 533
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	505, 612, 620
MnlI	CCTC	4 cut(s)	86, 269, 382, 514
Mox20I	TGGCCA	1 cut(s)	482
MroNI	GCCGGC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	171, 263
MspR9I	CCNGG	2 cut(s)	186, 263
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	11, 164, 235, 244
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	5 cut(s)	76, 267, 359, 394, 435
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	130, 178
NmuCI	GTSAC	1 cut(s)	110
NspV	TTCGAA	2 cut(s)	418, 544
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	383, 515
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	28, 142, 157, 169, 249, 508
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	435
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	131
SacII	CCGCGG	1 cut(s)	282
SatI	GCNGC	6 cut(s)	27, 141, 156, 168, 248, 507
Sau3AI	GATC	5 cut(s)	76, 267, 359, 394, 435
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	186, 263
Sfr303I	CCGCGG	1 cut(s)	282
SfuI	TTCGAA	2 cut(s)	418, 544
SgrBI	CCGCGG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	147, 484, 533
SsiI	CCGC	5 cut(s)	156, 248, 279, 281, 310
SspMI	CTAG	3 cut(s)	63, 426, 467
StyD4I	CCNGG	2 cut(s)	184, 261
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	221, 235
TaiI	ACGT	3 cut(s)	86, 117, 209
TaqI	TCGA	3 cut(s)	354, 418, 544
TasI	AATT	3 cut(s)	147, 484, 533
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	2 cut(s)	158, 250
TfiI	GAWTC	2 cut(s)	383, 515
TscAI	CASTG	2 cut(s)	369, 565
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	4 cut(s)	26, 140, 167, 506
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	191, 578, 639
TspRI	CASTG	2 cut(s)	369, 565
XapI	RAATTY	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	3 cut(s)	63, 426, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.