FvH4_1g05220

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002076
Physical Location & Seq
Reverse (-)
2779301 .. 2780097
797 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05220.t1

Sequence Viewer

Length: 576 bp
ATGGCAGACGACCGTAATGATGTTGAAATGGATGCTCCACAGCCAACTCGTGATCAACCTTCGATATATGATCGTTTGAATGATCGGGAACGAGTGACAACTAGTGAGGCGAGAAATGGTATGTTAGTTGTAGCTGCCCTTATTTCTGCGGCGACCTTCGCAGCGGGAATAAACCCACCAGGCGGGGTTTGGCAAGAGGATGACCAAAAAAACACTCCTCCTAAACACTTTTCGGGTAAGTCGGTTTTAGCTACTAATAGTGAAGTTTATTACCAAGTGTTCTATTTCTTGAACGCCGCAGCTTTCTCGTCGGCAAACCTGGTGATTGGTTATCTTGTACATAAATTTCCATATTATGTGGAAATATGGGGCGCTATGTTTTGTATGTCGGGAACCTACGGTATTTCGACTTCTGCAGTAAGTCCCCATGATTTCAACGATAAAATCATATGGTTTGCCATCGCCGTTCCTTACATATTAAGGGGTACTGTTGAAGTTTGGAAGAAATTGCATTGGCTTGTGGCACACGGCCCTGTTCCTCTTCCCGGACCTGGCGGATTTGCTGCTAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

192

Amino Acids

21.02

Weight (kDa)

5.66

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 35 - 116 3e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 149, 164, 183, 297, 555
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 2 cut(s) 339, 487
AfiI CCNNNNNNNGG 3 cut(s) 182, 545, 551
AgsI TTSAA 5 cut(s) 26, 79, 292, 436, 494
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 3 cut(s) 178, 318, 550
AluBI AGCT 3 cut(s) 134, 251, 302
AluI AGCT 3 cut(s) 134, 251, 302
AoxI GGCC 1 cut(s) 529
ApeKI GCWGC 4 cut(s) 134, 161, 299, 563
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 530, 548
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BauI CACGAG 1 cut(s) 48
BbvI GCAGC 4 cut(s) 121, 173, 311, 550
BccI CCATC 1 cut(s) 467
BceAI ACGGC 2 cut(s) 449, 544
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BciT130I CCWGG 3 cut(s) 180, 320, 552
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 1 cut(s) 546
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 567
BfmI CTRYAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 6 cut(s) 135, 150, 162, 297, 300, 564
BlsI GCNGC 6 cut(s) 136, 151, 163, 298, 301, 565
Bme1390I CCNGG 4 cut(s) 180, 320, 546, 552
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 530, 548
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 4 cut(s) 180, 320, 546, 552
BmsI GCATC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 546
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 545, 551
BseBI CCWGG 3 cut(s) 180, 320, 552
BseGI GGATG 2 cut(s) 37, 205
BseLI CCNNNNNNNGG 3 cut(s) 182, 545, 551
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 4 cut(s) 121, 173, 311, 550
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 531
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 182, 545, 551
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 1 cut(s) 531
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 3 cut(s) 52, 70, 82
BspACI CCGC 5 cut(s) 149, 164, 183, 297, 555
BspANI GGCC 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 337
BssMI GATC 3 cut(s) 52, 70, 82
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 180, 320, 552
Bst4CI ACNGT 3 cut(s) 14, 401, 490
Bst6I CTCTTC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 337
BstF5I GGATG 2 cut(s) 37, 205
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 3 cut(s) 55, 73, 85
BstMBI GATC 3 cut(s) 52, 70, 82
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 3 cut(s) 180, 320, 552
BstSCI CCNGG 4 cut(s) 178, 318, 544, 550
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 121, 173, 311, 550
BsuRI GGCC 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 445
BtsCI GGATG 2 cut(s) 37, 205
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 530, 548
CsiI ACCWGGT 1 cut(s) 318
Csp6I GTAC 2 cut(s) 338, 486
CviAII CATG 1 cut(s) 428
CviJI RGCY 6 cut(s) 43, 134, 251, 302, 517, 531
CviKI_1 RGCY 6 cut(s) 43, 134, 251, 302, 517, 531
CviQI GTAC 2 cut(s) 338, 486
DpnI GATC 3 cut(s) 54, 72, 84
DpnII GATC 3 cut(s) 52, 70, 82
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 178, 318, 550
FaeI CATG 1 cut(s) 431
FaqI GGGAC 1 cut(s) 408
FatI CATG 1 cut(s) 427
FauI CCCGC 2 cut(s) 157, 176
FauNDI CATATG 1 cut(s) 449
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 6 cut(s) 135, 150, 162, 297, 300, 564
FokI GGATG 2 cut(s) 44, 212
Fsp4HI GCNGC 6 cut(s) 135, 150, 162, 297, 300, 564
FspBI CTAG 2 cut(s) 102, 567
GlaI GCGC 1 cut(s) 373
GluI GCNGC 6 cut(s) 135, 150, 162, 297, 300, 564
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 531
HapII CCGG 1 cut(s) 546
HhaI GCGC 1 cut(s) 374
Hin1II CATG 1 cut(s) 431
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 334
Hpy188III TCNNGA 4 cut(s) 50, 86, 289, 390
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 69, 166
HpyCH4III ACNGT 3 cut(s) 14, 401, 490
HpyCH4V TGCA 2 cut(s) 416, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 431
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 3 cut(s) 52, 70, 82
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 165, 192, 305, 332, 537, 546, 559, 564
Lsp1109I GCAGC 4 cut(s) 121, 173, 311, 550
LweI GCATC 1 cut(s) 22
MabI ACCWGGT 1 cut(s) 318
MaeI CTAG 2 cut(s) 102, 567
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 54, 72, 84
MboI GATC 3 cut(s) 52, 70, 82
MboII GAAGA 2 cut(s) 514, 533
MluCI AATT 2 cut(s) 344, 506
MnlI CCTC 4 cut(s) 100, 190, 228, 549
MseI TTAA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 4 cut(s) 180, 320, 546, 552
MvaI CCWGG 3 cut(s) 180, 320, 552
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 546
NdeI CATATG 1 cut(s) 449
NdeII GATC 3 cut(s) 52, 70, 82
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 6 cut(s) 136, 151, 163, 298, 301, 565
Psp6I CCWGG 3 cut(s) 178, 318, 550
PspGI CCWGG 3 cut(s) 178, 318, 550
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 2 cut(s) 530, 548
PstI CTGCAG 1 cut(s) 418
RsaI GTAC 2 cut(s) 339, 487
RsaNI GTAC 2 cut(s) 338, 486
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 6 cut(s) 135, 150, 162, 297, 300, 564
Sau3AI GATC 3 cut(s) 52, 70, 82
Sau96I GGNCC 2 cut(s) 530, 548
ScrFI CCNGG 4 cut(s) 180, 320, 546, 552
SetI ASST 8 cut(s) 61, 136, 158, 253, 304, 321, 398, 553
SexAI ACCWGGT 1 cut(s) 318
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 2 cut(s) 344, 506
SsiI CCGC 5 cut(s) 149, 164, 183, 297, 555
SspMI CTAG 2 cut(s) 102, 567
StyD4I CCNGG 4 cut(s) 178, 318, 544, 550
TaaI ACNGT 3 cut(s) 14, 401, 490
TaqI TCGA 2 cut(s) 62, 407
TasI AATT 2 cut(s) 344, 506
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 152, 299
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 4 cut(s) 134, 161, 299, 563
Tsp45I GTSAC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 186
XspI CTAG 2 cut(s) 102, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.