RLG00000019355

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002076
Physical Location & Seq
Forward (+)
50735823 .. 50738498
2676 bp
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UTR
Exon/CDS
Intron
RLM00000019355

Sequence Viewer

Length: 429 bp
ATGGCTGATATTGAATTGACTGCACAGCCATCTGATGAACCTCATGTTCTGAAACGCGATATTGTCCACTTCAAGCCAGAACGAGACTCGGCAAATGATGACATAAGAAATGCCCTGTTAGTGGTCTCCACCCTGATCGCTGCCGCAACCTTTGCGCCCGGAGTGAACCCTCCGGGTGGGGTTTGGCAAGATAATGATAACACTAATGTTGCCGACCAGCGACCAGTCATAAGAGGTGTGAGGCCTCGTCCCTGTCGAGGACTCGAAGCTCGCCGGCAATTTTGGCGACAGTGTTGGTTAGATTTGACAGCAATTCTGAACGACAGACTGGATGTGAGGCCACCGTCGCCGGAGTTCTCCACAAATGGACCAATTACGGCGTGCTCTCCTACGCCAAGACTCGGTTGCCGGAGAATCTCAACCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

7.71

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 33 - 69 1.3e-09 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 144
AfiI CCNNNNNNNGG 4 cut(s) 121, 176, 257, 401
AgsI TTSAA 2 cut(s) 14, 73
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 78, 130
AoxI GGCC 2 cut(s) 242, 338
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 159, 174
AvaII GGWCC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 393
BcnI CCSGG 2 cut(s) 159, 174
BcoDI GTCTC 2 cut(s) 78, 130
BisI GCNGC 2 cut(s) 141, 144
BlsI GCNGC 2 cut(s) 142, 145
Bme1390I CCNGG 2 cut(s) 159, 174
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmrFI CCNGG 2 cut(s) 159, 174
BpuMI CCSGG 2 cut(s) 159, 174
BsaI GGTCTC 1 cut(s) 130
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 176, 257, 401
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 224, 333
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 4 cut(s) 121, 176, 257, 401
BseNI ACTGG 2 cut(s) 224, 333
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 244, 340
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 5 cut(s) 159, 173, 274, 350, 409
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 4 cut(s) 121, 176, 257, 401
BsmAI GTCTC 2 cut(s) 78, 130
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 244, 340
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 244, 340
BspFNI CGCG 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 2 cut(s) 224, 333
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 291, 345
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 271, 275, 382
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 78, 130
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 152, 283, 346
BstSCI CCNGG 2 cut(s) 157, 172
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 244, 340
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 3 cut(s) 271, 275, 382
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 368
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 5, 28, 76, 244, 269, 340
CviKI_1 RGCY 6 cut(s) 5, 28, 76, 244, 269, 340
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco147I AGGCCT 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 368
FaeI CATG 1 cut(s) 47
FaiI YATR 3 cut(s) 45, 104, 230
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 141, 144
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 141, 144
GlaI GCGC 1 cut(s) 156
GluI GCNGC 2 cut(s) 141, 144
HaeIII GGCC 2 cut(s) 244, 340
HapII CCGG 5 cut(s) 159, 173, 274, 350, 409
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 4 cut(s) 86, 261, 399, 414
HpaII CCGG 5 cut(s) 159, 173, 274, 350, 409
Hpy166II GTNNAC 2 cut(s) 67, 166
Hpy188I TCNGA 3 cut(s) 34, 51, 318
Hpy8I GTNNAC 2 cut(s) 67, 166
Hpy99I CGWCG 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 291, 345
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 283, 346
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 1 cut(s) 155
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 4 cut(s) 14, 278, 312, 372
MlyI GAGTC 3 cut(s) 80, 255, 393
MnlI CCTC 7 cut(s) 51, 180, 227, 234, 251, 255, 330
MroNI GCCGGC 1 cut(s) 273
MseI TTAA 1 cut(s) 427
MspI CCGG 5 cut(s) 159, 173, 274, 350, 409
MspR9I CCNGG 2 cut(s) 159, 174
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 152, 283, 346
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 2 cut(s) 159, 174
NdeII GATC 1 cut(s) 135
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 1 cut(s) 47
NmeAIII GCCGAG 1 cut(s) 68
PceI AGGCCT 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 414
PkrI GCNGC 2 cut(s) 142, 145
PleI GAGTC 3 cut(s) 80, 255, 393
PpsI GAGTC 3 cut(s) 80, 255, 393
PspPI GGNCC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 2 cut(s) 141, 144
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 3 cut(s) 80, 255, 393
ScrFI CCNGG 2 cut(s) 159, 174
SduI GDGCHC 1 cut(s) 386
SetI ASST 5 cut(s) 43, 152, 238, 271, 425
SinI GGWCC 1 cut(s) 368
Sse9I AATT 4 cut(s) 14, 278, 312, 372
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 1 cut(s) 144
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 157, 172
TaaI ACNGT 2 cut(s) 291, 345
TaqI TCGA 2 cut(s) 256, 264
TasI AATT 4 cut(s) 14, 278, 312, 372
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 1 cut(s) 296
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.