Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8224578.1

Orthogroup ID

OG0002076

Physical Location & Seq

Genomic Coordinates Forward (+)

321 .. 741

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8224578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggccgacagtgatgatgttgaaatggctgctacacagccaactggtgatcaaactgcttctaggtcgaaatatgatcttatgtacgatccaaaacgagacaccgcaaaagacgtaagaaatgctatgttagtcgtcgctgcccttatttctgcggcaaccttcgcagcgggaataaaccctccaggcggggtttggcaaggcgatatcgaaaattccactcaacactcttccgcaatcttgtatatagatttccatattatccggaaatatgggctgctatggtttctatgtcgggaacctacggtgtttcggttgctgccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGG

Protein Analysis

108

Amino Acids

11.95

Weight (kDa)

5.15

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11000
fragaria_vesca	FvH4_1g05220 FvH4_7g09310
prunus_persica	Prupe.2G121500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345971 RchiOBHm_Chr2g0133611 RchiOBHm_Chr2g0133631 RchiOBHm_Chr5g0006001
rosa_laevigata	RLG00000005019 RLG00000019355 RLG00000028828
rosa_multiflora	Rmu_co8224578.1_g000001 Rmu_sc0000924.1_g000032 Rmu_sc0003610.1_g000045 Rmu_sc0007285.1_g000012 Rmu_sc0007285.1_g000019 Rmu_sc0008115.1_g000009 Rmu_sc0013966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110970 Rroxscaffold_3G00270170 Rroxscaffold_4G00308980
rosa_rugosa	Rorug02G0312800 Rorug06G0460900
rosa_samantha	Rh1AG196200 Rh1BG161700 Rh1CG181200 Rh1DG192000 Rh2AG366100 Rh2AG366300 Rh2BG371600 Rh2BG371800 Rh2CG349200 Rh2CG349400 Rh2DG388200 Rh2DG388800 Rh5AG046600 Rh5BG045500 Rh5CG054100 Rh5DG045000 Rh7AG061500 Rh7BG061700
rosa_wichuraiana	Rw1G016420 Rw1G016500 Rw2G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	5 cut(s)	105, 155, 170, 189, 234
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	264
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	29, 140, 167, 277, 319
ApoI	RAATTY	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	59
BbvI	GCAGC	5 cut(s)	16, 127, 179, 264, 306
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	6 cut(s)	30, 141, 156, 168, 278, 320
BlsI	GCNGC	6 cut(s)	31, 142, 157, 169, 279, 321
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	5 cut(s)	16, 127, 179, 264, 306
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	49, 76, 88
BspACI	CCGC	5 cut(s)	105, 155, 170, 189, 234
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	49, 76, 88
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	11, 307
Bst6I	CTCTTC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	52, 79, 91
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	49, 76, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	5 cut(s)	16, 127, 179, 264, 306
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	85
CviJI	RGCY	4 cut(s)	5, 29, 40, 277
CviKI_1	RGCY	4 cut(s)	5, 29, 40, 277
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	3 cut(s)	51, 78, 90
DpnII	GATC	3 cut(s)	49, 76, 88
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	208
FaiI	YATR	9 cut(s)	75, 83, 128, 246, 248, 258, 273, 283, 292
FauI	CCCGC	2 cut(s)	163, 182
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	6 cut(s)	30, 141, 156, 168, 278, 320
Fsp4HI	GCNGC	6 cut(s)	30, 141, 156, 168, 278, 320
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	6 cut(s)	30, 141, 156, 168, 278, 320
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	265
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	265, 296
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	11, 307
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 76, 88
LpnPI	CCDG	4 cut(s)	30, 171, 198, 278
Lsp1109I	GCAGC	5 cut(s)	16, 127, 179, 264, 306
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	114
MalI	GATC	3 cut(s)	51, 78, 90
MboI	GATC	3 cut(s)	49, 76, 88
MboII	GAAGA	1 cut(s)	222
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	49, 76, 88
NlaIV	GGNNCC	1 cut(s)	300
PkrI	GCNGC	6 cut(s)	31, 142, 157, 169, 279, 321
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SatI	GCNGC	6 cut(s)	30, 141, 156, 168, 278, 320
Sau3AI	GATC	3 cut(s)	49, 76, 88
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	4 cut(s)	68, 117, 164, 304
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	5 cut(s)	105, 155, 170, 189, 234
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	11, 307
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	68, 210
TasI	AATT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	5 cut(s)	29, 140, 167, 277, 319
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.