RLG00000005019

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002076
Physical Location & Seq
Reverse (-)
64380797 .. 64381321
525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005019

Sequence Viewer

Length: 525 bp
ATGGCCGATATTGCTGTTGAAATGGCTGCTTCTAATTCACAGCCATCGGGTAATCAACCTTCTAGGTCGAGATACGATCTGACGTATAAGCCAGGACGAGACTCGGAAAGTGACGTAAGAAATACCATGTTGGTGGTGGCTGCCCTAATTACAGCCGCAACCTTTGCAGCCGGCATGAACCCACCTGGCGGAGTTTGGCAAGAAGATAACGTTTCTCGTAAACATTATTCGGGTAAGTCGATTTTAGGTACTCAAAGCGTTACTACATACCGAGTGTTCTTCTTCTTGAACTCGACAGCTTTTTCATCGGCTACACTTGTAATAAACTACCTTGTGTGGAACTTTCCATATTCTCCGGAGATATGGGGTGCTCTGGGTTGTATGGCTGCAACCTACAGTGCTTCTGTTGCCGCAGTAAGTCCTCCCGGAGATAATTTCTACCGCCGGTTCATATGGGTTGCCATAGCCTTTCCCTATATGGTGCGGATTATTGTTGATTTGTGGAACAAATGGCGCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

175

Amino Acids

19.26

Weight (kDa)

9.3

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 37 - 114 1.5e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 5 cut(s) 156, 189, 411, 442, 484
AclI AACGTT 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 20, 289
AjnI CCWGG 2 cut(s) 91, 184
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 26, 140, 167, 386
AspLEI GCGC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 4 cut(s) 13, 127, 179, 373
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 93, 186
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 394
BisI GCNGC 6 cut(s) 27, 141, 156, 168, 387, 411
BlsI GCNGC 6 cut(s) 28, 142, 157, 169, 388, 412
Bme1390I CCNGG 3 cut(s) 93, 186, 426
BmrFI CCNGG 3 cut(s) 93, 186, 426
BpuMI CCSGG 1 cut(s) 426
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 2 cut(s) 170, 444
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 2 cut(s) 93, 186
BseLI CCNNNNNNNGG 1 cut(s) 188
BseXI GCAGC 4 cut(s) 13, 127, 179, 373
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 4 cut(s) 171, 356, 426, 445
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 373
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 5 cut(s) 156, 189, 411, 442, 484
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 355
BsrFI RCCGGY 2 cut(s) 170, 444
BssAI RCCGGY 2 cut(s) 170, 444
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 93, 186
Bst4CI ACNGT 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 172
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 11, 164, 407
BstNI CCWGG 2 cut(s) 93, 186
BstSCI CCNGG 3 cut(s) 91, 184, 424
BstSFI CTRYAG 1 cut(s) 394
BstV1I GCAGC 4 cut(s) 13, 127, 179, 373
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 516
Cfr10I RCCGGY 2 cut(s) 170, 444
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 127, 175
CviQI GTAC 1 cut(s) 249
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 91, 184
FaeI CATG 2 cut(s) 130, 178
FatI CATG 2 cut(s) 126, 174
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 6 cut(s) 27, 141, 156, 168, 387, 411
Fsp4HI GCNGC 6 cut(s) 27, 141, 156, 168, 387, 411
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 515
GluI GCNGC 6 cut(s) 27, 141, 156, 168, 387, 411
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 171, 356, 426, 445
HhaI GCGC 1 cut(s) 516
Hin1II CATG 2 cut(s) 130, 178
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 1 cut(s) 101
HpaII CCGG 4 cut(s) 171, 356, 426, 445
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 81, 106
Hpy188III TCNNGA 3 cut(s) 69, 286, 356
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 3 cut(s) 83, 114, 210
HpyCH4V TGCA 2 cut(s) 167, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 164, 407
HpySE526I ACGT 3 cut(s) 83, 114, 210
Hsp92II CATG 2 cut(s) 130, 178
HspAI GCGC 1 cut(s) 514
Kpn2I TCCGGA 1 cut(s) 355
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 9 cut(s) 78, 105, 171, 184, 198, 359, 369, 439, 458
Lsp1109I GCAGC 4 cut(s) 13, 127, 179, 373
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 83, 114, 210
MaeIII GTNAC 2 cut(s) 110, 259
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 215, 271, 274
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 34, 147, 433
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 432
MroI TCCGGA 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 4 cut(s) 171, 356, 426, 445
MspR9I CCNGG 3 cut(s) 93, 186, 426
MvaI CCWGG 2 cut(s) 93, 186
MwoI GCNNNNNNNGC 3 cut(s) 11, 164, 407
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 426
NdeI CATATG 1 cut(s) 452
NdeII GATC 1 cut(s) 76
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 130, 178
NmuCI GTSAC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PdiI GCCGGC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 6 cut(s) 28, 142, 157, 169, 388, 412
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 91, 184
PspGI CCWGG 2 cut(s) 91, 184
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 6 cut(s) 27, 141, 156, 168, 387, 411
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 93, 186, 426
SduI GDGCHC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 3 cut(s) 34, 147, 433
SsiI CCGC 5 cut(s) 156, 189, 411, 442, 484
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 91, 184, 424
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 3 cut(s) 86, 117, 213
TaqI TCGA 3 cut(s) 68, 239, 293
TasI AATT 3 cut(s) 34, 147, 433
TauI GCSGC 2 cut(s) 158, 413
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 26, 140, 167, 386
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 191, 294, 439
TspRI CASTG 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.