Rroxscaffold_2G00110970

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002076
Physical Location & Seq
Reverse (-)
35504325 .. 35505662
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110970.1

Sequence Viewer

Length: 519 bp
ATGAAGTTTCTAAATTTTCTACAACTTGTCGTGATGAAATTGCAGATATCGAAAGAAACTCCAAGGACTAATAAGAAAGTCTCTCTGTACAGTCGTGCCAACTGTCAAGGAAGGATCAAAACAAATAATCGACCTAACCATGAACTCTATTTAAAGCACAGGACGTGGTCGATCTCCACCCTGATCGCTGCGGCAACCTTTGCAGCCGGAATGAACCCTCCAGGAGGGGTGCAAGATAATGATAACACTCATGTTGCCGGCCAGTCAGTCTTAGCTTCTTACAGTAAAGATTCATTCAAAATGTTCCTTTTCTCGAACACAACAGCGTTTTCTTCGTCTACAATTGTGATTTTGTTTCTTGTCAGTAACTTTACATTTTATCTGGAGATCTGGATAGCCATGGCCGGTATGACATTTACCTACGGTGTTTCAATTTCTTCTGTAAGCTCCAAGGGAAATATTAAGCCAGGCTACACGTACATTGCACTGGCTTTAGGTAGTAGGTACCCTATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.96

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 58 - 140 6.5e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 338
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 2 cut(s) 259, 402
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 3 cut(s) 89, 479, 506
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 2 cut(s) 298, 432
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 2 cut(s) 220, 466
AluBI AGCT 2 cut(s) 275, 447
AluI AGCT 2 cut(s) 275, 447
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 122
AoxI GGCC 2 cut(s) 259, 402
ApeKI GCWGC 2 cut(s) 188, 203
ApoI RAATTY 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 175, 215
BciT130I CCWGG 2 cut(s) 222, 468
BcoDI GTCTC 1 cut(s) 85
BglII AGATCT 1 cut(s) 387
BisI GCNGC 3 cut(s) 189, 192, 204
BlsI GCNGC 3 cut(s) 190, 193, 205
Bme1390I CCNGG 2 cut(s) 222, 468
BmgBI CACGTC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 222, 468
BpmI CTGGAG 2 cut(s) 204, 404
BsaAI YACGTR 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 62, 399, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 2 cut(s) 257, 404
Bse1I ACTGG 2 cut(s) 262, 492
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 222, 468
BseDI CCNNGG 3 cut(s) 62, 399, 450
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 262, 492
BseXI GCAGC 2 cut(s) 175, 215
BshFI GGCC 2 cut(s) 261, 404
BshNI GGYRCC 1 cut(s) 504
BsiSI CCGG 3 cut(s) 207, 258, 405
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 261, 404
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 114, 171, 183, 387
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 261, 404
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 2 cut(s) 257, 404
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 2 cut(s) 262, 492
BssAI RCCGGY 2 cut(s) 257, 404
BssECI CCNNGG 3 cut(s) 62, 399, 450
BssMI GATC 4 cut(s) 114, 171, 183, 387
BssT1I CCWWGG 3 cut(s) 62, 399, 450
Bst2UI CCWGG 2 cut(s) 222, 468
Bst4CI ACNGT 4 cut(s) 92, 104, 284, 425
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 399
BstENI CCTNNNNNAGG 1 cut(s) 222
BstKTI GATC 4 cut(s) 117, 174, 186, 390
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 4 cut(s) 114, 171, 183, 387
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 222, 468
BstSCI CCNGG 2 cut(s) 220, 466
BstV1I GCAGC 2 cut(s) 175, 215
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuRI GGCC 2 cut(s) 261, 404
BtgI CCRYGG 1 cut(s) 399
BtrI CACGTC 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 259
Cfr10I RCCGGY 2 cut(s) 257, 404
Csp6I GTAC 3 cut(s) 88, 478, 505
CviAII CATG 3 cut(s) 140, 251, 400
CviJI RGCY 9 cut(s) 206, 261, 275, 398, 404, 447, 466, 471, 491
CviKI_1 RGCY 9 cut(s) 206, 261, 275, 398, 404, 447, 466, 471, 491
CviQI GTAC 3 cut(s) 88, 478, 505
DdeI CTNAG 1 cut(s) 271
DpnI GATC 4 cut(s) 116, 173, 185, 389
DpnII GATC 4 cut(s) 114, 171, 183, 387
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 259, 402
Eco130I CCWWGG 3 cut(s) 62, 399, 450
Eco32I GATATC 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 220, 466
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 3 cut(s) 62, 399, 450
ErhI CCWWGG 3 cut(s) 62, 399, 450
FaeI CATG 3 cut(s) 143, 254, 403
FaiI YATR 5 cut(s) 141, 252, 401, 410, 512
FatI CATG 3 cut(s) 139, 250, 399
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 3 cut(s) 189, 192, 204
Fsp4HI GCNGC 3 cut(s) 189, 192, 204
GluI GCNGC 3 cut(s) 189, 192, 204
GsuI CTGGAG 2 cut(s) 204, 404
HaeIII GGCC 2 cut(s) 261, 404
HapII CCGG 3 cut(s) 207, 258, 405
Hin1II CATG 3 cut(s) 143, 254, 403
HinfI GANTC 1 cut(s) 290
HpaII CCGG 3 cut(s) 207, 258, 405
Hpy166II GTNNAC 1 cut(s) 339
Hpy188III TCNNGA 5 cut(s) 31, 313, 383, 391, 516
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 4 cut(s) 92, 104, 284, 425
HpyCH4IV ACGT 2 cut(s) 164, 476
HpyCH4V TGCA 4 cut(s) 43, 203, 232, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 2 cut(s) 164, 476
Hsp92II CATG 3 cut(s) 143, 254, 403
KpnI GGTACC 1 cut(s) 508
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 4 cut(s) 114, 171, 183, 387
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 2 cut(s) 175, 215
MaeII ACGT 2 cut(s) 164, 476
MaeIII GTNAC 1 cut(s) 365
MalI GATC 4 cut(s) 116, 173, 185, 389
MboI GATC 4 cut(s) 114, 171, 183, 387
MboII GAAGA 2 cut(s) 324, 429
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 387
MluCI AATT 4 cut(s) 13, 38, 342, 432
MnlI CCTC 2 cut(s) 218, 228
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 2 cut(s) 152, 462
MspI CCGG 3 cut(s) 207, 258, 405
MspR9I CCNGG 2 cut(s) 222, 468
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 2 cut(s) 222, 468
MwoI GCNNNNNNNGC 1 cut(s) 200
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 399
NdeII GATC 4 cut(s) 114, 171, 183, 387
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 3 cut(s) 143, 254, 403
NlaIV GGNNCC 1 cut(s) 506
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 3 cut(s) 190, 193, 205
Ppu21I YACGTR 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 220, 466
PspGI CCWGG 2 cut(s) 220, 466
PspN4I GGNNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 166
RsaI GTAC 3 cut(s) 89, 479, 506
RsaNI GTAC 3 cut(s) 88, 478, 505
SaqAI TTAA 2 cut(s) 152, 462
SatI GCNGC 3 cut(s) 189, 192, 204
Sau3AI GATC 4 cut(s) 114, 171, 183, 387
ScrFI CCNGG 2 cut(s) 222, 468
SetI ASST 9 cut(s) 136, 167, 200, 277, 422, 449, 479, 499, 506
Sse9I AATT 4 cut(s) 13, 38, 342, 432
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 220, 466
StyI CCWWGG 3 cut(s) 62, 399, 450
TaaI ACNGT 4 cut(s) 92, 104, 284, 425
TaiI ACGT 2 cut(s) 167, 479
TaqI TCGA 4 cut(s) 50, 130, 170, 314
TasI AATT 4 cut(s) 13, 38, 342, 432
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 152, 462
Tru9I TTAA 2 cut(s) 152, 462
TscAI CASTG 1 cut(s) 492
TseI GCWGC 2 cut(s) 188, 203
TspDTI ATGAA 5 cut(s) 17, 50, 156, 227, 282
TspRI CASTG 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.