Rh2DG388800

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002076
Physical Location & Seq
Forward (+)
56294007 .. 56294919
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG388800.1

Sequence Viewer

Length: 237 bp
ATGGCCGACAGTGATGTTGAAATGGCTGCTCTACAGCCAACTGGTGATCAAACTGCTTCTAGGTCGAAATATGATCTTATGTACGATCCAAAACGAGACACCACAGAAGACGAAAGAAATGCTATGTTAGTCGTCGCTGCCCTTATTTCTGCGGCAACCTTCGCAGCGGGAATAAACCCTCCAGGGGGGGGTTTGGCAAGGCGATATCGAAAATTCCACTCAACACTCTTCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

78

Amino Acids

8.54

Weight (kDa)

6.54

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 34 - 64 1.5e-07 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 152, 167
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 3 cut(s) 184, 185, 188
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 26, 137, 164
ApoI RAATTY 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 13, 124, 176
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 4 cut(s) 27, 138, 153, 165
BlsI GCNGC 4 cut(s) 28, 139, 154, 166
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 185, 188
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 184, 185, 188
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 13, 124, 176
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 184, 185, 188
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 46, 73, 85
BspACI CCGC 2 cut(s) 152, 167
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 46, 73, 85
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 233
BstKTI GATC 3 cut(s) 49, 76, 88
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 46, 73, 85
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 13, 124, 176
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 3 cut(s) 5, 26, 37
CviKI_1 RGCY 3 cut(s) 5, 26, 37
CviQI GTAC 1 cut(s) 82
DpnI GATC 3 cut(s) 48, 75, 87
DpnII GATC 3 cut(s) 46, 73, 85
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 181
EcoRV GATATC 1 cut(s) 206
FaiI YATR 3 cut(s) 72, 80, 125
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 27, 138, 153, 165
Fsp4HI GCNGC 4 cut(s) 27, 138, 153, 165
FspBI CTAG 1 cut(s) 60
GluI GCNGC 4 cut(s) 27, 138, 153, 165
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 232
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 73, 85
LpnPI CCDG 3 cut(s) 27, 168, 195
Lsp1109I GCAGC 3 cut(s) 13, 124, 176
MaeI CTAG 1 cut(s) 60
MalI GATC 3 cut(s) 48, 75, 87
MboI GATC 3 cut(s) 46, 73, 85
MboII GAAGA 2 cut(s) 119, 220
MluCI AATT 1 cut(s) 212
MnlI CCTC 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 46, 73, 85
PkrI GCNGC 4 cut(s) 28, 139, 154, 166
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 4 cut(s) 27, 138, 153, 165
Sau3AI GATC 3 cut(s) 46, 73, 85
ScrFI CCNGG 1 cut(s) 183
SetI ASST 2 cut(s) 65, 161
SfcI CTRYAG 1 cut(s) 32
SgeI CNNG 7 cut(s) 54, 72, 107, 180, 194, 195, 210
Sse9I AATT 1 cut(s) 212
SsiI CCGC 2 cut(s) 152, 167
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 65, 208
TasI AATT 1 cut(s) 212
TauI GCSGC 1 cut(s) 155
TscAI CASTG 1 cut(s) 16
TseI GCWGC 3 cut(s) 26, 137, 164
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 212
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.