Rmu_sc0008115.1_g000009

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008115.1
OG0002076
Physical Location & Seq
Reverse (-)
38360 .. 38899
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008115.1_g000009.1.cds

Sequence Viewer

Length: 540 bp
atggctagctcaccagaaaaaccagtagagaaccctccaaaaaaatctgggtggagctggttcacgagctttgagtatgacaaggagatcgacaaaccaggcgatgcacgtaacgttctgctagtagttgcagcgctgatcactgccgtgaccttccaagccggggtcaatcctccgggaggcgtttggcaagacaatgataatggacacactgcaggaagagccatttatgcaactcacaaggcgccgttttatgtgttcttgatatcgaacaccttggctctttcgagttcgatcttcataattgttttgcttactcacaggttccctttccattttgaggtaatgattgccacactttctatgattgtgacttatggctctgctgtgtttgctgtgaccccgaacgagtctgtgaagtttcgttacatattgttcactgctgctctgccttatgtgctgaggttcttgtttcagttgttcaagaagtataaacattctgttcgttttaggtgtcaaaacccatgttccgattgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

9.17

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AclI AACGTT 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 163, 179, 340
AgsI TTSAA 1 cut(s) 484
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 3 cut(s) 9, 57, 69
AluI AGCT 3 cut(s) 9, 57, 69
Aor51HI AGCGCT 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 131, 443
AspLEI GCGC 2 cut(s) 136, 247
AsuC2I CCSGG 2 cut(s) 163, 177
AsuHPI GGTGA 1 cut(s) 3
AsuNHI GCTAGC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BauI CACGAG 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 143, 430
BceAI ACGGC 2 cut(s) 131, 232
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 163, 177
BfaI CTAG 2 cut(s) 6, 122
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 2 cut(s) 137, 248
BisI GCNGC 2 cut(s) 132, 444
BlsI GCNGC 2 cut(s) 133, 445
Bme1390I CCNGG 3 cut(s) 99, 163, 177
BmiI GGNNCC 2 cut(s) 246, 326
BmrFI CCNGG 3 cut(s) 99, 163, 177
BmsI GCATC 1 cut(s) 94
BmtI GCTAGC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 163, 177
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 162, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 179, 340
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 162, 276
BseLI CCNNNNNNNGG 3 cut(s) 163, 179, 340
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 143, 430
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 162, 176
BslI CCNNNNNNNGG 3 cut(s) 163, 179, 340
Bsp143I GATC 3 cut(s) 87, 138, 294
BspCNI CTCAG 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 246, 326
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 162, 276
BssMI GATC 3 cut(s) 87, 138, 294
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 461
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 137, 248
BstHHI GCGC 2 cut(s) 136, 247
BstKTI GATC 3 cut(s) 90, 141, 297
BstMBI GATC 3 cut(s) 87, 138, 294
BstMWI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 3 cut(s) 97, 161, 175
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 143, 430
BtgZI GCGATG 1 cut(s) 117
BtsI GCAGTG 3 cut(s) 141, 210, 438
BtsIMutI CAGTG 3 cut(s) 141, 210, 438
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 136, 247
CviAII CATG 1 cut(s) 525
CviJI RGCY 8 cut(s) 5, 9, 57, 69, 161, 224, 281, 381
CviKI_1 RGCY 8 cut(s) 5, 9, 57, 69, 161, 224, 281, 381
DdeI CTNAG 1 cut(s) 461
DinI GGCGCC 1 cut(s) 246
DpnI GATC 3 cut(s) 89, 140, 296
DpnII GATC 3 cut(s) 87, 138, 294
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 267
Eco47III AGCGCT 1 cut(s) 135
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 528
FatI CATG 1 cut(s) 524
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 132, 444
Fsp4HI GCNGC 2 cut(s) 132, 444
FspBI CTAG 2 cut(s) 6, 122
GlaI GCGC 2 cut(s) 135, 246
GluI GCNGC 2 cut(s) 132, 444
HaeII RGCGCY 2 cut(s) 137, 248
HapII CCGG 2 cut(s) 162, 176
HhaI GCGC 2 cut(s) 136, 247
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 528
Hin6I GCGC 2 cut(s) 134, 245
HinP1I GCGC 2 cut(s) 134, 245
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 162, 176
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 63, 438
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 3 cut(s) 64, 262, 484
Hpy8I GTNNAC 2 cut(s) 63, 438
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 109, 114
HpyCH4V TGCA 4 cut(s) 107, 131, 215, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 2 cut(s) 109, 114
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 528
HspAI GCGC 2 cut(s) 134, 245
KasI GGCGCC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 87, 138, 294
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 2 cut(s) 143, 430
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 6, 122
MaeII ACGT 2 cut(s) 109, 114
MaeIII GTNAC 5 cut(s) 110, 148, 370, 397, 425
MalI GATC 3 cut(s) 89, 140, 296
MboI GATC 3 cut(s) 87, 138, 294
MboII GAAGA 2 cut(s) 231, 289
MluCI AATT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 245
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 5 cut(s) 45, 173, 183, 334, 456
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 162, 176
MspR9I CCNGG 3 cut(s) 99, 163, 177
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 221, 230, 392, 457
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 2 cut(s) 163, 177
NdeII GATC 3 cut(s) 87, 138, 294
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 2 cut(s) 246, 326
NmuCI GTSAC 3 cut(s) 148, 370, 397
OliI CACNNNNGTG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 133, 445
PleI GAGTC 1 cut(s) 418
PluTI GGCGCC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 246, 326
PstI CTGCAG 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SatI GCNGC 2 cut(s) 132, 444
Sau3AI GATC 3 cut(s) 87, 138, 294
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 99, 163, 177
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 303
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 2 cut(s) 6, 122
StyD4I CCNGG 3 cut(s) 97, 161, 175
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 112, 117
TaqI TCGA 4 cut(s) 90, 269, 287, 293
TasI AATT 1 cut(s) 303
TscAI CASTG 3 cut(s) 148, 217, 445
TseFI GTSAC 3 cut(s) 148, 370, 397
TseI GCWGC 2 cut(s) 131, 443
Tsp45I GTSAC 3 cut(s) 148, 370, 397
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 3 cut(s) 148, 217, 445
XagI CCTNNNNNAGG 1 cut(s) 177
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.