Rh1CG181200

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002076
Physical Location & Seq
Forward (+)
39936498 .. 39937037
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG181200.1

Sequence Viewer

Length: 405 bp
ATGGCTAGCCCACCAGAAAAACCAGTAGAGAACCCTCCAAAAAAATCTGGGTGGAGCTGGTTCACGAGCTTTGAGTATGACAAGGATATCGACAAACCAGGCGATGCACGTAACGTTCTGCTAGTAGTTGCAGCGCTGATCACTGCCGTGACCTTCCAAGCCGGGGTCAATCCTCCGGGAGGCGTTTGGCAAGACAATGATAATGGACACACTGCAGGAAGAGCCATTTATGCAACTCACAAGGCGCCGTTTTATGTGTTCTTGATATCGAACACCTTGGCTCTTTCGAGTTCGATCTTCATAATTGTTTTGCTTACTCACAGGTTCCCTTTCCATTTTGAGTTGTTCAAGAAGTATAAACATTCTGTTCGTTTTAGGTGTCAAAACCCATGTTCCGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

134

Amino Acids

15.04

Weight (kDa)

8.83

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 35 - 109 4.1e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AclI AACGTT 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 163, 179
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 2 cut(s) 57, 69
AluI AGCT 2 cut(s) 57, 69
Aor51HI AGCGCT 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 136, 247
AsuC2I CCSGG 2 cut(s) 163, 177
AsuNHI GCTAGC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 64
BbvI GCAGC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 131, 232
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 163, 177
BfaI CTAG 2 cut(s) 6, 122
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 2 cut(s) 137, 248
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 3 cut(s) 99, 163, 177
BmiI GGNNCC 2 cut(s) 246, 326
BmrFI CCNGG 3 cut(s) 99, 163, 177
BmsI GCATC 1 cut(s) 94
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 163, 177
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 162, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 179
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 162, 276
BseLI CCNNNNNNNGG 2 cut(s) 163, 179
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 162, 176
BslI CCNNNNNNNGG 2 cut(s) 163, 179
Bsp143I GATC 2 cut(s) 138, 294
BspLI GGNNCC 2 cut(s) 246, 326
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 162, 276
BssMI GATC 2 cut(s) 138, 294
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 137, 248
BstHHI GCGC 2 cut(s) 136, 247
BstKTI GATC 2 cut(s) 141, 297
BstMBI GATC 2 cut(s) 138, 294
BstMWI GCNNNNNNNGC 2 cut(s) 221, 230
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 3 cut(s) 97, 161, 175
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 117
BtsI GCAGTG 2 cut(s) 141, 210
BtsIMutI CAGTG 2 cut(s) 141, 210
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 136, 247
CviAII CATG 1 cut(s) 390
CviJI RGCY 7 cut(s) 5, 9, 57, 69, 161, 224, 281
CviKI_1 RGCY 7 cut(s) 5, 9, 57, 69, 161, 224, 281
DinI GGCGCC 1 cut(s) 246
DpnI GATC 2 cut(s) 140, 296
DpnII GATC 2 cut(s) 138, 294
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 2 cut(s) 88, 267
Eco47III AGCGCT 1 cut(s) 135
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 2 cut(s) 88, 267
EcoT14I CCWWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 393
FaiI YATR 6 cut(s) 78, 231, 255, 302, 357, 391
FatI CATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 6, 122
GlaI GCGC 2 cut(s) 135, 246
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 2 cut(s) 137, 248
HapII CCGG 2 cut(s) 162, 176
HhaI GCGC 2 cut(s) 136, 247
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 393
Hin6I GCGC 2 cut(s) 134, 245
HinP1I GCGC 2 cut(s) 134, 245
HpaII CCGG 2 cut(s) 162, 176
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 3 cut(s) 64, 262, 349
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 109, 114
HpyCH4V TGCA 4 cut(s) 107, 131, 215, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 230
HpySE526I ACGT 2 cut(s) 109, 114
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 393
HspAI GCGC 2 cut(s) 134, 245
KasI GGCGCC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 294
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 6, 122
MaeII ACGT 2 cut(s) 109, 114
MaeIII GTNAC 2 cut(s) 110, 148
MalI GATC 2 cut(s) 140, 296
MboI GATC 2 cut(s) 138, 294
MboII GAAGA 2 cut(s) 231, 289
MluCI AATT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 245
MnlI CCTC 3 cut(s) 45, 173, 183
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 162, 176
MspR9I CCNGG 3 cut(s) 99, 163, 177
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 221, 230
NarI GGCGCC 1 cut(s) 245
NciI CCSGG 2 cut(s) 163, 177
NdeII GATC 2 cut(s) 138, 294
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 246, 326
NmuCI GTSAC 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 133
PluTI GGCGCC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 246, 326
PstI CTGCAG 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 138, 294
ScrFI CCNGG 3 cut(s) 99, 163, 177
SetI ASST 8 cut(s) 59, 71, 112, 117, 155, 278, 326, 380
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 303
SspDI GGCGCC 1 cut(s) 244
SspMI CTAG 2 cut(s) 6, 122
StyD4I CCNGG 3 cut(s) 97, 161, 175
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 112, 117
TaqI TCGA 4 cut(s) 90, 269, 287, 293
TasI AATT 1 cut(s) 303
TscAI CASTG 2 cut(s) 148, 217
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 2 cut(s) 148, 217
XagI CCTNNNNNAGG 1 cut(s) 177
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.