Rh7BG061700

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002076
Physical Location & Seq
Forward (+)
4108786 .. 4109313
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG061700.1

Sequence Viewer

Length: 528 bp
ATGGGCGATATTGCTGTTGAAATGGCTGCTTCTAATTCACAGCCATCGGGTAATCAACCTTCTAGGTCGAGATACGATCTGACGTATAAGCCAGGACGAGACTCGGAAAGTGACATAAGAAATACCATGTTGGTGGTGGCTGCCCTAATTACAGCCGCAACCTTTGCAGCAGGCATCAACCCACCTGGCGGAGTTTGGCAAGAAGATAACGTTTCTCGTAAACAGTATTCGGGTAAGTCGATTTTAGGTACTCAAAGCGTTACTACATACCGAGTGTTCTTCTTGTTGAACTCGACAGCTTTTTCATCGGCTACACTTGTAATAAACTACCTTGTGTGGAACTTTCCATATTCTCCGGAGATATGGGGTGCTCTGGGTTGTATGGCGGCAACCTACGGTGCTTCTGTTTCCGCAGTAAGTCCTCCTGGAGATCATTTCTACGGCCGGTTCATATGGGTTGCCATAGCCTTTCCCTATATGGTGCGGATTATTGCTGATTTGTGGAACAAATATTGGCGCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

175

Amino Acids

19.24

Weight (kDa)

9.04

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 37 - 114 1.3e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 5 cut(s) 156, 189, 386, 411, 484
AclI AACGTT 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 442
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 20, 289
AjnI CCWGG 3 cut(s) 91, 184, 424
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 26, 140, 167
AspLEI GCGC 1 cut(s) 519
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 13, 127, 179
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 457
BciT130I CCWGG 3 cut(s) 93, 186, 426
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 63
BisI GCNGC 5 cut(s) 27, 141, 156, 168, 387
BlsI GCNGC 5 cut(s) 28, 142, 157, 169, 388
Bme1390I CCNGG 3 cut(s) 93, 186, 426
BmrFI CCNGG 3 cut(s) 93, 186, 426
BmsI GCATC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 444
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 3 cut(s) 93, 186, 426
BseLI CCNNNNNNNGG 1 cut(s) 188
BseX3I CGGCCG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 13, 127, 179
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 2 cut(s) 356, 445
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 373
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 76, 430
BspACI CCGC 5 cut(s) 156, 189, 386, 411, 484
BspANI GGCC 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 444
BssMI GATC 2 cut(s) 76, 430
Bst2UI CCWGG 3 cut(s) 93, 186, 426
Bst4CI ACNGT 2 cut(s) 225, 398
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 172
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 2 cut(s) 79, 433
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 76, 430
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 3 cut(s) 93, 186, 426
BstSCI CCNGG 3 cut(s) 91, 184, 424
BstV1I GCAGC 3 cut(s) 13, 127, 179
BstXI CCANNNNNNTGG 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 442
BsuRI GGCC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 519
Cfr10I RCCGGY 1 cut(s) 444
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 127
CviJI RGCY 9 cut(s) 26, 43, 91, 140, 155, 299, 311, 444, 467
CviKI_1 RGCY 9 cut(s) 26, 43, 91, 140, 155, 299, 311, 444, 467
CviQI GTAC 1 cut(s) 249
DpnI GATC 2 cut(s) 78, 432
DpnII GATC 2 cut(s) 76, 430
EaeI YGGCCR 1 cut(s) 442
EagI CGGCCG 1 cut(s) 442
EciI GGCGGA 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 442
EcoRII CCWGG 3 cut(s) 91, 184, 424
FaeI CATG 1 cut(s) 130
FatI CATG 1 cut(s) 126
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 5 cut(s) 27, 141, 156, 168, 387
Fsp4HI GCNGC 5 cut(s) 27, 141, 156, 168, 387
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 518
GluI GCNGC 5 cut(s) 27, 141, 156, 168, 387
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 1 cut(s) 444
HapII CCGG 2 cut(s) 356, 445
HhaI GCGC 1 cut(s) 519
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 356, 445
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 81, 106
Hpy188III TCNNGA 2 cut(s) 69, 356
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 225, 398
HpyCH4IV ACGT 2 cut(s) 83, 210
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 83, 210
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 517
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 76, 430
Lsp1109I GCAGC 3 cut(s) 13, 127, 179
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 83, 210
MaeIII GTNAC 2 cut(s) 110, 259
MalI GATC 2 cut(s) 78, 432
MboI GATC 2 cut(s) 76, 430
MboII GAAGA 2 cut(s) 215, 271
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 34, 147
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 432
MroI TCCGGA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 2 cut(s) 356, 445
MspR9I CCNGG 3 cut(s) 93, 186, 426
MvaI CCWGG 3 cut(s) 93, 186, 426
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 452
NdeII GATC 2 cut(s) 76, 430
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 5 cut(s) 28, 142, 157, 169, 388
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 91, 184, 424
PspGI CCWGG 3 cut(s) 91, 184, 424
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 5 cut(s) 27, 141, 156, 168, 387
Sau3AI GATC 2 cut(s) 76, 430
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 93, 186, 426
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 2 cut(s) 34, 147
SsiI CCGC 5 cut(s) 156, 189, 386, 411, 484
SspI AATATT 1 cut(s) 512
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 91, 184, 424
TaaI ACNGT 2 cut(s) 225, 398
TaiI ACGT 2 cut(s) 86, 213
TaqI TCGA 3 cut(s) 68, 239, 293
TasI AATT 2 cut(s) 34, 147
TauI GCSGC 2 cut(s) 158, 389
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 3 cut(s) 26, 140, 167
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 294, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.