RchiOBHm_Chr5g0006001

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002076
Physical Location & Seq
Reverse (-)
3750618 .. 3751603
986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28716

Sequence Viewer

Length: 540 bp
ATGGCTAGCCCACCAGAAAAACCAGTCGCGAACCCTCCAAAAAAATCTGGGTGGAGCTGGTTCACGAGCTTTGAGTATGACAAGGAGAATGACGAACCAGGCCATGCACGTAACGTTCTGCTAGTAGTTGCGGCGCTGATCACTGCTGTGACATTCCAAGCCGGGGTCAATCCTCCGGGAGGTGTCTGGCAAGACAATGGAAAGGGTCACACTGCAGGAAGAGCCATTTACGCAACTCACCAGGTGCCGTTTTATGTTTTCTTGATATCGAACACCTTGGCTCTTTCGAGTTCAATCTTCATAATCGTATTGCTTACTCATAGGTTCCCTTTCCATTTTGAGGTAATGATTGCCACACTTTCTATGATTGTGACTTATGGCTCTGCTGTGTTTGCTGTGACCCCGAAGGAGTCGGTGAAATTTCGTTACATATTGTTCACTGCTGCTCTGCCTTATGTGTTGAGGTTCTTGTTCCAGTTGTTCAAGAAGAATAGACATAATGTTCGTTTTAGGTGTCAAAACCGATGTTCCGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

179

Amino Acids

20.16

Weight (kDa)

9.64

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 35 - 131 1.1e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 114
AcsI RAATTY 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 163, 179, 340
AgsI TTSAA 2 cut(s) 294, 484
AjnI CCWGG 2 cut(s) 97, 240
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 2 cut(s) 57, 69
AluI AGCT 2 cut(s) 57, 69
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
AspLEI GCGC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 163, 177
AsuHPI GGTGA 2 cut(s) 230, 427
AsuNHI GCTAGC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 64
BbvI GCAGC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 2 cut(s) 99, 242
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 163, 177
BfaI CTAG 2 cut(s) 6, 122
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 2 cut(s) 132, 444
BlsI GCNGC 2 cut(s) 133, 445
Bme1390I CCNGG 4 cut(s) 99, 163, 177, 242
BmiI GGNNCC 2 cut(s) 246, 326
BmrFI CCNGG 4 cut(s) 99, 163, 177, 242
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 163, 177
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 162, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 179, 340
Bse1I ACTGG 2 cut(s) 23, 475
BseBI CCWGG 2 cut(s) 99, 242
BseDI CCNNGG 2 cut(s) 162, 276
BseLI CCNNNNNNNGG 3 cut(s) 163, 179, 340
BseNI ACTGG 2 cut(s) 23, 475
BseXI GCAGC 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 162, 176
BslI CCNNNNNNNGG 3 cut(s) 163, 179, 340
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 102
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 246, 326
BspMAI CTGCAG 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 2 cut(s) 23, 475
BssECI CCNNGG 2 cut(s) 162, 276
BssMI GATC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 99, 242
Bst6I CTCTTC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 392
BstNI CCWGG 2 cut(s) 99, 242
BstSCI CCNGG 4 cut(s) 97, 161, 175, 240
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 102
BtsI GCAGTG 3 cut(s) 141, 210, 438
BtsIMutI CAGTG 3 cut(s) 141, 210, 438
BtuMI TCGCGA 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 136
CsiI ACCWGGT 1 cut(s) 240
CviAII CATG 1 cut(s) 104
CviJI RGCY 9 cut(s) 5, 9, 57, 69, 102, 161, 224, 281, 381
CviKI_1 RGCY 9 cut(s) 5, 9, 57, 69, 102, 161, 224, 281, 381
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DraIII CACNNNGTG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 97, 240
EcoRV GATATC 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 107
FatI CATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 132, 444
Fsp4HI GCNGC 2 cut(s) 132, 444
FspBI CTAG 2 cut(s) 6, 122
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 132, 444
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 162, 176
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 162, 176
HphI GGTGA 2 cut(s) 230, 427
Hpy166II GTNNAC 2 cut(s) 63, 438
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 4 cut(s) 28, 64, 262, 484
Hpy8I GTNNAC 2 cut(s) 63, 438
HpyAV CCTTC 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 109, 114
HpyCH4V TGCA 2 cut(s) 107, 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 392
HpySE526I ACGT 2 cut(s) 109, 114
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 430
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 2 cut(s) 6, 122
MaeII ACGT 2 cut(s) 109, 114
MaeIII GTNAC 6 cut(s) 110, 148, 206, 370, 397, 425
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 231, 289, 499
MluCI AATT 1 cut(s) 419
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 5 cut(s) 45, 173, 183, 334, 456
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 162, 176
MspR9I CCNGG 4 cut(s) 99, 163, 177, 242
MvaI CCWGG 2 cut(s) 99, 242
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 392
NciI CCSGG 2 cut(s) 163, 177
NdeII GATC 1 cut(s) 138
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 246, 326
NmuCI GTSAC 4 cut(s) 148, 206, 370, 397
NruI TCGCGA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 133, 445
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 110
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 97, 240
PspGI CCWGG 2 cut(s) 97, 240
PspN4I GGNNCC 2 cut(s) 246, 326
PstI CTGCAG 1 cut(s) 217
RruI TCGCGA 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SatI GCNGC 2 cut(s) 132, 444
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 4 cut(s) 99, 163, 177, 242
SexAI ACCWGGT 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 419
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 6, 122
StyD4I CCNGG 4 cut(s) 97, 161, 175, 240
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 112, 117
TaqI TCGA 2 cut(s) 269, 287
TasI AATT 1 cut(s) 419
TauI GCSGC 1 cut(s) 134
TscAI CASTG 3 cut(s) 148, 217, 445
TseFI GTSAC 4 cut(s) 148, 206, 370, 397
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 4 cut(s) 148, 206, 370, 397
TspDTI ATGAA 1 cut(s) 289
TspRI CASTG 3 cut(s) 148, 217, 445
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 1 cut(s) 419
XspI CTAG 2 cut(s) 6, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.