Rh2AG366100

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002076
Physical Location & Seq
Forward (+)
54255575 .. 54256862
1288 bp
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UTR
Exon/CDS
Intron
Rh2AG366100.1

Sequence Viewer

Length: 312 bp
ATGAACCCTCCGGGAGGGGTTTGGCAAGATAATGATAACACTCATGTTGCCGGCCAGTCAGTCTTAGCTTCTTACATTAAAGATTCGTTCAAAATGTTCCTTTTCTCGAACACAGCAGCGTTTTCTTCGTCTACAATTGTGATTTTGTTTCTTGTCAGTAACTTTCCATTTTATCTGGAGATCTGGATAGCCATGGCCGATATGACATTTACCTACGACGTTTCAATTTCTACTGTAAGCTCCAAGGGAAATATTAAGCCAGGCTACACGTACATTGCACTGGCTTTAGGTAGTAGGTACCCTATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

5.49

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 1 - 55 8.5e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 52, 195
AfaI GTAC 2 cut(s) 272, 299
AfiI CCNNNNNNNGG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 91, 225
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 68, 240
AluI AGCT 2 cut(s) 68, 240
AoxI GGCC 2 cut(s) 52, 195
ApeKI GCWGC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 12
BanI GGYRCC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 1 cut(s) 12
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 12, 261
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 12, 261
BpmI CTGGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 192, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 55, 285
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 192, 243
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 55, 285
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 2 cut(s) 54, 197
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 11, 51
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 2 cut(s) 54, 197
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 2 cut(s) 54, 197
BspLI GGNNCC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 2 cut(s) 55, 285
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 192, 243
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 192, 243
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 12
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 10, 259
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 2 cut(s) 54, 197
BtgI CCRYGG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 50
Csp6I GTAC 2 cut(s) 271, 298
CviAII CATG 2 cut(s) 44, 193
CviJI RGCY 8 cut(s) 54, 68, 191, 197, 240, 259, 264, 284
CviKI_1 RGCY 8 cut(s) 54, 68, 191, 197, 240, 259, 264, 284
CviQI GTAC 2 cut(s) 271, 298
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 2 cut(s) 52, 195
Eco130I CCWWGG 2 cut(s) 192, 243
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 192, 243
ErhI CCWWGG 2 cut(s) 192, 243
FaeI CATG 2 cut(s) 47, 196
FaiI YATR 4 cut(s) 45, 194, 203, 305
FatI CATG 2 cut(s) 43, 192
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 2 cut(s) 54, 197
HapII CCGG 2 cut(s) 11, 51
Hin1II CATG 2 cut(s) 47, 196
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 11, 51
Hpy166II GTNNAC 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 106, 176, 184, 309
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 219, 269
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 2 cut(s) 219, 269
Hsp92II CATG 2 cut(s) 47, 196
KpnI GGTACC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 24, 64, 68, 161, 169, 246, 266, 273
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 2 cut(s) 219, 269
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 117
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 180
MluCI AATT 2 cut(s) 135, 225
MnlI CCTC 2 cut(s) 8, 18
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 2 cut(s) 78, 255
MspI CCGG 2 cut(s) 11, 51
MspR9I CCNGG 2 cut(s) 12, 261
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 261
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 1 cut(s) 12
NcoI CCATGG 1 cut(s) 192
NdeII GATC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 47, 196
NlaIV GGNNCC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 272, 299
RsaNI GTAC 2 cut(s) 271, 298
SaqAI TTAA 2 cut(s) 78, 255
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 12, 261
SetI ASST 7 cut(s) 70, 215, 222, 242, 272, 292, 299
Sse9I AATT 2 cut(s) 135, 225
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 10, 259
StyI CCWWGG 2 cut(s) 192, 243
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 222, 272
TaqI TCGA 1 cut(s) 107
TasI AATT 2 cut(s) 135, 225
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 78, 255
Tru9I TTAA 2 cut(s) 78, 255
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.