Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005045

Physical Location & Seq

Genomic Coordinates Reverse (-)

8986598 .. 8988661

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15802.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGATGGTCATGATTCTGAGGATACTAAGCAGAGCACTGCTGATATGACTGCTTTTGTCCAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATGTCGGACTCCATCATCACAAAGATTGATGACATGGGAGGCAGAATCAATGAGCTGGAGCAAAGCATCAATGATCTAAGAGCCGAGATGGGAGTAGAAGGCACTCCTCCTCCAGCCTCCAAATCAGGCGATGAACCCAAAACACCGGCTAGTTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005829 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010286 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034605 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070370

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

HSBP1

Protein Analysis

86

Amino Acids

9.35

Weight (kDa)

4.29

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSBP1	PF06825	15 - 62	6.3e-24	Heat shock factor binding protein 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15802
fragaria_vesca	FvH4_2g25350 FvH4_4g18020
malus_domestica	MD03G1285000.v1.1 MD11G1304500.v1.1
prunus_persica	Prupe.1G136900_v2.0.a1 Prupe.8G258100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422221 RchiOBHm_Chr4g0422231 RchiOBHm_Chr6g0293541
rosa_laevigata	RLG00000007627 RLG00000011943
rosa_multiflora	Rmu_co8197430.1_g000001 Rmu_sc0003930.1_g000016 Rmu_sc0006269.1_g000007 Rmu_sc0014362.1_g000003 Rmu_sc0028622.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364340 Rroxscaffold_7G00174100
rosa_rugosa	Rorug04G0178900 Rorug06G0236300
rosa_samantha	Rh4AG237800 Rh4BG241000 Rh4CG252900 Rh4DG236500 Rh6AG349000 Rh6BG356400 Rh6CG363100 Rh6DG350000
rosa_wichuraiana	Rw4G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	119, 181
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	69, 174
BpmI	CTGGAG	3 cut(s)	56, 176, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse118I	RCCGGY	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	195, 198
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	18, 27, 176
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	86
CviAII	CATG	2 cut(s)	11, 133
CviJI	RGCY	4 cut(s)	154, 182, 215, 248
CviKI_1	RGCY	4 cut(s)	154, 182, 215, 248
DdeI	CTNAG	3 cut(s)	18, 27, 176
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	14, 136
FaiI	YATR	3 cut(s)	12, 47, 134
FatI	CATG	2 cut(s)	10, 132
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	249
GsuI	CTGGAG	3 cut(s)	56, 176, 195
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	14, 136
HinfI	GANTC	3 cut(s)	14, 107, 144
HpaII	CCGG	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	19, 106
Hpy188III	TCNNGA	2 cut(s)	11, 94
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	18, 27, 176
Hsp92II	CATG	2 cut(s)	14, 136
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	73, 86, 100, 107, 140, 210, 225
LweI	GCATC	2 cut(s)	69, 174
MabI	ACCWGGT	1 cut(s)	86
MaeI	CTAG	1 cut(s)	249
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	13, 131, 216, 219, 226
MseI	TTAA	1 cut(s)	259
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	14, 136
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	208
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	14, 144
PflFI	GACNNNGTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	92
PsyI	GACNNNGTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	2 cut(s)	92, 156
SexAI	ACCWGGT	1 cut(s)	86
SfaNI	GCATC	2 cut(s)	69, 174
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	14, 144
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	100
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.