MD03G1285000.v1.1

Heat shock factor binding protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0005045
Physical Location & Seq
Reverse (-)
36496741 .. 36497748
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1285000.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGACGGGCATGATTCGGAGGATCCGAAGCAGAGCACTGCCGACATGTCTGCTTTTGTGCAAAATCTTCTTCAACAAATGGTGAGTTTTTCTCGAGTTGAGCAATCTAGGTTCCAAACAATGTCCGACTCCATTGTTACGAAGAATATCCTTTTCCCGTTTTCTTTAACTTTGAAAGCGTTTATCTGTCCGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

66

Amino Acids

7.4

Weight (kDa)

5.55

Isoelectric Point (pI)

81.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 48 4.9e-06 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 193
AciI CCGC 1 cut(s) 191
AclWI GGATC 2 cut(s) 17, 30
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 2 cut(s) 74, 175
Alw21I GWGCWC 1 cut(s) 38
AlwI GGATC 2 cut(s) 17, 30
Ama87I CYCGRG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 93
BamHI GGATCC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BfaI CTAG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 24, 113
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bsh1236I CGCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 24, 113
BspPI GGATC 2 cut(s) 17, 30
BssMI GATC 1 cut(s) 22
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 49
BstUI CGCG 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CviAII CATG 2 cut(s) 11, 46
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 93
FaeI CATG 2 cut(s) 14, 49
FaiI YATR 2 cut(s) 12, 47
FatI CATG 2 cut(s) 10, 45
FspBI CTAG 1 cut(s) 108
Hin1II CATG 2 cut(s) 14, 49
HinfI GANTC 2 cut(s) 14, 128
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 19, 27, 127
Hpy188III TCNNGA 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 61
Hsp92II CATG 2 cut(s) 14, 49
Kzo9I GATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 59, 62, 154
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 167
MvnI CGCG 1 cut(s) 193
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 14, 49
NlaIV GGNNCC 2 cut(s) 24, 113
NspI RCATGY 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 93
PciI ACATGT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 24, 113
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 1 cut(s) 22
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 38
SetI ASST 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 93
SgeI CNNG 7 cut(s) 19, 23, 58, 105, 107, 120, 169
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 108
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 43
TspRI CASTG 1 cut(s) 43
XceI RCATGY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 93
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.