Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014362.1

Orthogroup ID

OG0005045

Physical Location & Seq

Genomic Coordinates Reverse (-)

8554 .. 11033

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014362.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgaatttgaatggccagaccataggggctatgtatgaaatttctttcgaggagaggaccatctatgcaatttggcatgaaaggaaaaaagtaaggcgcgccaataagcaattagggccagaatggtcattttgttgctacacaaagctcttcactattcccctctccgcttccaaatttactaaaccaccacactctttctcctcctctccgcactcaacagccgcgagtctacaaaaccttgccaacgcggagccttcgatcatggatggacatgatacagatgacccgaaacaaagcactgctgatatgacagcttttgtacaaaatcttctccagcagatgcaaaccaggttccagacaatgtctgactccatcgtctcgaagaatatcctttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

HSBP1

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

7.81

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15802
fragaria_vesca	FvH4_2g25350 FvH4_4g18020
malus_domestica	MD03G1285000.v1.1 MD11G1304500.v1.1
prunus_persica	Prupe.1G136900_v2.0.a1 Prupe.8G258100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422221 RchiOBHm_Chr4g0422231 RchiOBHm_Chr6g0293541
rosa_laevigata	RLG00000007627 RLG00000011943
rosa_multiflora	Rmu_co8197430.1_g000001 Rmu_sc0003930.1_g000016 Rmu_sc0006269.1_g000007 Rmu_sc0014362.1_g000003 Rmu_sc0028622.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364340 Rroxscaffold_7G00174100
rosa_rugosa	Rorug04G0178900 Rorug06G0236300
rosa_samantha	Rh4AG237800 Rh4BG241000 Rh4CG252900 Rh4DG236500 Rh6AG349000 Rh6BG356400 Rh6CG363100 Rh6DG350000
rosa_wichuraiana	Rw4G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	232
AccII	CGCG	3 cut(s)	99, 227, 251
AciI	CCGC	4 cut(s)	168, 212, 225, 251
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	3 cut(s)	4, 39, 176
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	148, 317
AluI	AGCT	2 cut(s)	148, 317
Alw26I	GTCTC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	13, 116
ApoI	RAATTY	3 cut(s)	4, 39, 176
AscI	GGCGCGCC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	99, 101
AspS9I	GGNCC	2 cut(s)	57, 116
AvaII	GGWCC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BccI	CCATC	3 cut(s)	68, 263, 383
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 116
BmiI	GGNNCC	2 cut(s)	255, 356
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
BseBI	CCWGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	274
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	3 cut(s)	65, 193, 196
Bsh1236I	CGCG	3 cut(s)	99, 227, 251
BshFI	GGCC	2 cut(s)	15, 118
BsmAI	GTCTC	1 cut(s)	385
BsmBI	CGTCTC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	15, 118
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	4 cut(s)	168, 212, 225, 251
BspANI	GGCC	2 cut(s)	15, 118
BspFNI	CGCG	3 cut(s)	99, 227, 251
BspLI	GGNNCC	2 cut(s)	255, 356
BspQI	GCTCTTC	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	322
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	3 cut(s)	99, 227, 251
BstHHI	GCGC	2 cut(s)	99, 101
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	3 cut(s)	99, 227, 251
BsuRI	GGCC	2 cut(s)	15, 118
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	2 cut(s)	99, 101
Cfr13I	GGNCC	2 cut(s)	57, 116
CsiI	ACCWGGT	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	3 cut(s)	77, 265, 275
CviJI	RGCY	7 cut(s)	15, 29, 118, 148, 224, 256, 317
CviKI_1	RGCY	7 cut(s)	15, 29, 118, 148, 224, 256, 317
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	3 cut(s)	80, 268, 278
FaiI	YATR	9 cut(s)	23, 32, 36, 66, 78, 266, 276, 311, 400
FatI	CATG	3 cut(s)	76, 264, 274
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	2 cut(s)	98, 100
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	15, 118
HhaI	GCGC	2 cut(s)	99, 101
Hin1II	CATG	3 cut(s)	80, 268, 278
Hin6I	GCGC	2 cut(s)	97, 99
HinP1I	GCGC	2 cut(s)	97, 99
HinfI	GANTC	2 cut(s)	229, 371
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	358, 382
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	68, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	80, 268, 278
HspAI	GCGC	2 cut(s)	97, 99
Kzo9I	GATC	1 cut(s)	261
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	6 cut(s)	29, 132, 337, 350, 364, 371
LweI	GCATC	1 cut(s)	333
MabI	ACCWGGT	1 cut(s)	350
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	142, 323, 397
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	5 cut(s)	4, 39, 69, 110, 176
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	238, 365
MnlI	CCTC	5 cut(s)	43, 48, 173, 214, 217
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	3 cut(s)	99, 227, 251
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	80, 268, 278
NlaIV	GGNNCC	2 cut(s)	255, 356
PalAI	GGCGCGCC	1 cut(s)	97
PauI	GCGCGC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	237, 365
PpsI	GAGTC	2 cut(s)	237, 365
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	255, 356
PspPI	GGNCC	2 cut(s)	57, 116
PsyI	GACNNNGTC	1 cut(s)	364
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	57, 116
SchI	GAGTC	2 cut(s)	238, 365
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	4 cut(s)	150, 243, 319, 356
SexAI	ACCWGGT	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	333
SgsI	GGCGCGCC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	5 cut(s)	4, 39, 69, 110, 176
SsiI	CCGC	4 cut(s)	168, 212, 225, 251
StyD4I	CCNGG	1 cut(s)	350
TaqI	TCGA	3 cut(s)	48, 260, 383
TasI	AATT	5 cut(s)	4, 39, 69, 110, 176
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	227
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	17, 51, 93, 387
TspRI	CASTG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	3 cut(s)	4, 39, 176
XmiI	GTMKAC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.