Rh4CG252900

Heat shock factor-binding protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005045
Physical Location & Seq
Reverse (-)
50287444 .. 50297290
9847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG252900.1

Sequence Viewer

Length: 546 bp
ATGATTGATTGGGAATTGGTGTGCTTAGCTTTGCTGATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTCAGCTTCAGAAGCCTGCAAAGATGCATTCTTATGCTTAAAACGGTCGCTACCTTGAGGAGAGTGGCCGACATGGTGTTCACTATTGGGTTTGTGATGAGCAAGCTGGAAGCCGCGAGTCTCCAAAACCTTGCCAACGCAGAGCCTTCGATCATGGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATCTTAAGTTTGCTTTGTATCCTTGACCATGATGCACTTGATGAGATGGGCAACAGGATCGAGGAGTTAGAGCAGAGCATCAATGATCTCAGAGCCGAAATGGGAGTGGAGGGCACGCCATCCCCTTCAGCCCCTTCAAAGCCCAAGGTAGATACGAAGTCAGCTGATGATTCAGCCAACCAATCAGGGCTGAAAATTATATTGGAACACTTTTTGAACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

181

Amino Acids

20.34

Weight (kDa)

4.36

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 89 - 140 1.8e-12 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 3 cut(s) 55, 61, 432
AfaI GTAC 1 cut(s) 282
AflII CTTAAG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 41, 459, 538
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 6 cut(s) 29, 64, 75, 175, 275, 485
AluI AGCT 6 cut(s) 29, 64, 75, 175, 275, 485
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 386
AoxI GGCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 3 cut(s) 221, 361, 448
BcgI CGANNNNNNTGC 4 cut(s) 198, 232, 361, 395
BciT130I CCWGG 1 cut(s) 310
BciVI GTATCC 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 325
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 83, 291, 343, 408
BpmI CTGGAG 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 232, 440
BseMII CTCAG 1 cut(s) 424
BseRI GAGGAG 2 cut(s) 142, 398
BseSI GKGCMC 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 66, 437
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 219, 378, 406
Bsp1720I GCTNAGC 1 cut(s) 25
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 423
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 3 cut(s) 219, 378, 406
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 86, 173, 437
BstDEI CTNAG 2 cut(s) 25, 410
BstF5I GGATG 2 cut(s) 232, 440
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 3 cut(s) 222, 381, 409
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 219, 378, 406
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 1 cut(s) 185
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 232, 440
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 3 cut(s) 86, 173, 437
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 1 cut(s) 281
CviAII CATG 4 cut(s) 142, 223, 233, 350
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 25, 410
DpnI GATC 3 cut(s) 221, 380, 408
DpnII GATC 3 cut(s) 219, 378, 406
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 3 cut(s) 55, 61, 432
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 145, 226, 236, 353
FaiI YATR 7 cut(s) 104, 143, 224, 234, 269, 351, 521
FatI CATG 4 cut(s) 141, 222, 232, 349
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 239, 427
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 4 cut(s) 145, 226, 236, 353
HinfI GANTC 2 cut(s) 187, 491
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 80, 413
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 3 cut(s) 225, 456, 465
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 88, 96, 304, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 25, 410
Hsp92II CATG 4 cut(s) 145, 226, 236, 353
Kzo9I GATC 3 cut(s) 219, 378, 406
LguI GCTCTTC 1 cut(s) 71
LpnPI CCDG 8 cut(s) 98, 161, 295, 308, 322, 329, 361, 492
LweI GCATC 4 cut(s) 83, 291, 343, 408
MabI ACCWGGT 1 cut(s) 308
MalI GATC 3 cut(s) 221, 380, 408
MboI GATC 3 cut(s) 219, 378, 406
MboII GAAGA 5 cut(s) 53, 56, 58, 61, 281
MhlI GDGCHC 2 cut(s) 66, 437
MluCI AATT 2 cut(s) 14, 516
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 120, 376, 424
Mph1103I ATGCAT 1 cut(s) 98
MseI TTAA 2 cut(s) 108, 326
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 3 cut(s) 219, 378, 406
NlaIII CATG 4 cut(s) 145, 226, 236, 353
NlaIV GGNNCC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 71
PctI GAATGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 108, 326
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 219, 378, 406
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 2 cut(s) 66, 437
SexAI ACCWGGT 1 cut(s) 308
SfaNI GCATC 4 cut(s) 83, 291, 343, 408
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 124, 325
SmoI CTYRAG 2 cut(s) 124, 325
Sse9I AATT 2 cut(s) 14, 516
SsiI CCGC 1 cut(s) 183
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 218, 381
TasI AATT 2 cut(s) 14, 516
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 108, 326
Tru9I TTAA 2 cut(s) 108, 326
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.