Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028622.1

Orthogroup ID

OG0005045

Physical Location & Seq

Genomic Coordinates Reverse (-)

1763 .. 2862

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028622.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggacgggcacgattcggaggattcgaagcagagcactgctgatatgtctgcttttgtgcaaaatctgcttcaacagatgcaaactaggttccaatcgatgtctgacaacattgttacaaagaatatccttttctctgattcttcaagttataagcaatcatctttgcatgctaggatgggaaaccgcattaacgagttggaacgtagcatcggtgacctaagaacagagatgggaatcgaaggctctccatctcccgccccccagtccaagtctgatgaagatggagggaagcaagatgaaggttcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

4.61

Isoelectric Point (pI)

99.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15802
fragaria_vesca	FvH4_2g25350 FvH4_4g18020
malus_domestica	MD03G1285000.v1.1 MD11G1304500.v1.1
prunus_persica	Prupe.1G136900_v2.0.a1 Prupe.8G258100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422221 RchiOBHm_Chr4g0422231 RchiOBHm_Chr6g0293541
rosa_laevigata	RLG00000007627 RLG00000011943
rosa_multiflora	Rmu_co8197430.1_g000001 Rmu_sc0003930.1_g000016 Rmu_sc0006269.1_g000007 Rmu_sc0014362.1_g000003 Rmu_sc0028622.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364340 Rroxscaffold_7G00174100
rosa_rugosa	Rorug04G0178900 Rorug06G0236300
rosa_samantha	Rh4AG237800 Rh4BG241000 Rh4CG252900 Rh4DG236500 Rh6AG349000 Rh6BG356400 Rh6CG363100 Rh6DG350000
rosa_wichuraiana	Rw4G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AciI	CCGC	2 cut(s)	187, 258
AgsI	TTSAA	2 cut(s)	74, 147
Alw21I	GWGCWC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	4 cut(s)	172, 226, 259, 278
BfaI	CTAG	2 cut(s)	87, 174
BmiI	GGNNCC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	69, 219
BmuI	ACTGGG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	98
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	12, 38
BspACI	CCGC	2 cut(s)	187, 258
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	98
CviAII	CATG	2 cut(s)	170, 312
CviJI	RGCY	1 cut(s)	246
CviKI_1	RGCY	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	215
FaeI	CATG	2 cut(s)	173, 315
FaiI	YATR	4 cut(s)	47, 153, 171, 313
FatI	CATG	2 cut(s)	169, 311
FauI	CCCGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	190
FspBI	CTAG	2 cut(s)	87, 174
Hin1II	CATG	2 cut(s)	173, 315
HinfI	GANTC	4 cut(s)	14, 23, 140, 237
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	19, 106, 139, 277
HpyAV	CCTTC	2 cut(s)	236, 296
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	61, 82, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	173, 315
LpnPI	CCDG	1 cut(s)	278
LweI	GCATC	2 cut(s)	69, 219
MaeI	CTAG	2 cut(s)	87, 174
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	115, 215
MboII	GAAGA	2 cut(s)	135, 293
MhlI	GDGCHC	2 cut(s)	12, 38
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	13, 281
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	173, 315
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	14, 23, 140, 237
PsiI	TTATAA	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	12, 38
SetI	ASST	4 cut(s)	92, 208, 222, 307
SfaNI	GCATC	2 cut(s)	69, 219
SfuI	TTCGAA	1 cut(s)	26
SphI	GCATGC	1 cut(s)	173
SsiI	CCGC	2 cut(s)	187, 258
SspMI	CTAG	2 cut(s)	87, 174
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	26, 98, 240
TfiI	GAWTC	4 cut(s)	14, 23, 140, 237
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	294, 315
TspRI	CASTG	1 cut(s)	43
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	2 cut(s)	87, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.