FvH4_2g25350

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005045
Physical Location & Seq
Reverse (-)
20606624 .. 20609240
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25350.t1

Sequence Viewer

Length: 270 bp
ATGGACGGGCATGATTCGGAGGATTCGAAGCAGAGCACTGCTGATATGTCTGCTTTTGTGCAAAATCTGCTTCAACAGATGCAAACTAGGTTCCAGTCGATGTCCGACAACATTGTTACAAAGATTGATGAGATGGGAAACCGCATTAACGAGTTGGAGCGTAGCATCGGTGACCTAAGAACAGAGATGGGAATTGAAGGCTCTCCAGCTCCCAGCCCCCAGTCCAAGCCAGATGAAGAGGGAGGGAAGCAAGAGGAAGGTTCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

90

Amino Acids

9.78

Weight (kDa)

4.29

Isoelectric Point (pI)

93.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 62 1.5e-23 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 74, 197
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 127, 181
BfaI CTAG 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 69, 174
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 94, 220
BseNI ACTGG 2 cut(s) 94, 220
BseYI CCCAGC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 26
BsrI ACTGG 2 cut(s) 94, 220
Bst6I CTCTTC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 176
BstEII GGTNACC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CviAII CATG 2 cut(s) 11, 267
CviJI RGCY 4 cut(s) 201, 209, 216, 229
CviKI_1 RGCY 4 cut(s) 201, 209, 216, 229
DdeI CTNAG 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
FaeI CATG 2 cut(s) 14, 270
FaiI YATR 3 cut(s) 12, 47, 268
FatI CATG 2 cut(s) 10, 266
FspBI CTAG 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 189
Hin1II CATG 2 cut(s) 14, 270
HinfI GANTC 2 cut(s) 14, 23
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 19, 106
HpyAV CCTTC 2 cut(s) 191, 251
HpyCH4V TGCA 2 cut(s) 61, 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 14, 270
LmnI GCTCC 2 cut(s) 157, 214
LpnPI CCDG 5 cut(s) 107, 219, 226, 233, 243
LweI GCATC 2 cut(s) 69, 174
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 115, 170
MboII GAAGA 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 129, 135
MnlI CCTC 4 cut(s) 13, 232, 236, 247
MseI TTAA 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 14, 270
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 2 cut(s) 14, 23
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 147
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 92, 177, 211, 262
SfaNI GCATC 2 cut(s) 69, 174
SfuI TTCGAA 1 cut(s) 26
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 87
TaqI TCGA 2 cut(s) 26, 98
TasI AATT 1 cut(s) 192
TfiI GAWTC 2 cut(s) 14, 23
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 43
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.