FvH4_4g18020

Heat shock factor-binding protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005045
Physical Location & Seq
Reverse (-)
21975003 .. 21978078
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18020.t1

Sequence Viewer

Length: 273 bp
ATGGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAGTGAGGTTCCAGACAATGTCAGACTCTATCGTCTCGAAGATTGATGAGATGGGCAACAGGATCGATGAGTTAGAGAACAGCATCAACGATCTCAGAGCTGAAATGGGAGTGGATGGCTCGCCATCTCCTTCAGCCCCTTCGAAGCCCAAGGTAGATACCAAGTCAGGGGATGATTCAGCCAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

4.33

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 62 1.8e-24 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AclWI GGATC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 249
AluBI AGCT 2 cut(s) 53, 182
AluI AGCT 2 cut(s) 53, 182
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BccI CCATC 3 cut(s) 127, 191, 214
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BcoDI GTCTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 2 cut(s) 69, 174
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 224
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 231, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 231, 264
BseGI GGATG 3 cut(s) 10, 202, 259
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 190
BshVI ATCGAT 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 144, 172
BspCNI CTCAG 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 231, 264
BssMI GATC 2 cut(s) 144, 172
BssT1I CCWWGG 2 cut(s) 231, 264
BstAUI TGTACA 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 10, 202, 259
BstKTI GATC 2 cut(s) 147, 175
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 144, 172
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 3 cut(s) 10, 202, 259
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 11
CviJI RGCY 6 cut(s) 53, 182, 201, 218, 229, 263
CviKI_1 RGCY 6 cut(s) 53, 182, 201, 218, 229, 263
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 146, 174
DpnII GATC 2 cut(s) 144, 172
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 231, 264
Eco57I CTGAAG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 231, 264
ErhI CCWWGG 2 cut(s) 231, 264
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 47
FatI CATG 1 cut(s) 10
FokI GGATG 3 cut(s) 17, 209, 266
GsuI CTGGAG 1 cut(s) 56
Hin1II CATG 1 cut(s) 14
HinfI GANTC 2 cut(s) 107, 257
Hpy188I TCNGA 2 cut(s) 106, 179
Hpy188III TCNNGA 2 cut(s) 94, 118
HpyAV CCTTC 2 cut(s) 222, 231
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 2 cut(s) 144, 172
LpnPI CCDG 4 cut(s) 86, 107, 127, 234
LweI GCATC 2 cut(s) 69, 174
MalI GATC 2 cut(s) 146, 174
MboI GATC 2 cut(s) 144, 172
MboII GAAGA 2 cut(s) 59, 133
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 81
NdeII GATC 2 cut(s) 144, 172
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 224
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 100
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 144, 172
SchI GAGTC 1 cut(s) 101
SetI ASST 4 cut(s) 55, 92, 184, 237
SfaNI GCATC 2 cut(s) 69, 174
SfuI TTCGAA 1 cut(s) 224
StyI CCWWGG 2 cut(s) 231, 264
TaqI TCGA 3 cut(s) 119, 147, 224
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 43
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.