Rh4BG241000

Heat shock factor binding protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005045
Physical Location & Seq
Reverse (-)
40772975 .. 40777103
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG241000.1

Sequence Viewer

Length: 372 bp
ATGAATTTGAATGGCCAGACCATAGGGGCTATGTATGAAATTTCTTTCGAGGAGAGGACCATCTATGCAATTTGGCATGAAAGGAAAAAAGTAAGGCGCGCCAATAAGCAATTAGGGCCAGAATGGTCATTTTGTTGCTTCACAAAGCTCTTCTCTATTCCCATCTCCGCTTCCAAATTTACTAAACCACCACACCCTTCTCCTACTCTCCGCACTCGAACAGCCGCGAGTCTCCAAAACCTTGGCAACGCAGAGCCTTCGATCATGGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTGAGTTCCGGTCCTACCTTCTTTTTTAATTTTAGGGTTTCTGTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

123

Amino Acids

13.85

Weight (kDa)

8.91

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 99, 227
AciI CCGC 3 cut(s) 168, 211, 225
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 3 cut(s) 4, 39, 176
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 148, 317
AluI AGCT 2 cut(s) 148, 317
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 2 cut(s) 13, 116
ApoI RAATTY 3 cut(s) 4, 39, 176
AscI GGCGCGCC 1 cut(s) 97
AspLEI GCGC 2 cut(s) 99, 101
AspS9I GGNCC 3 cut(s) 57, 116, 332
AvaII GGWCC 2 cut(s) 57, 332
BalI TGGCCA 1 cut(s) 15
BccI CCATC 3 cut(s) 68, 170, 263
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BcoDI GTCTC 1 cut(s) 236
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 57, 332
BmgT120I GGNCC 3 cut(s) 57, 116, 332
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 274
BsePI GCGCGC 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 99, 227
BshFI GGCC 2 cut(s) 15, 118
BsiSI CCGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 15, 118
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 3 cut(s) 168, 211, 225
BspANI GGCC 2 cut(s) 15, 118
BspFNI CGCG 2 cut(s) 99, 227
BspQI GCTCTTC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 241
BssHII GCGCGC 1 cut(s) 97
BssMI GATC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 99, 227
BstHHI GCGC 2 cut(s) 99, 101
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstUI CGCG 2 cut(s) 99, 227
BstXI CCANNNNNNTGG 1 cut(s) 242
BsuRI GGCC 2 cut(s) 15, 118
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 2 cut(s) 99, 101
Cfr13I GGNCC 3 cut(s) 57, 116, 332
CviAII CATG 3 cut(s) 77, 265, 275
CviJI RGCY 7 cut(s) 15, 29, 118, 148, 224, 256, 317
CviKI_1 RGCY 7 cut(s) 15, 29, 118, 148, 224, 256, 317
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 57, 332
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 80, 268, 278
FaiI YATR 9 cut(s) 23, 32, 36, 66, 78, 266, 276, 311, 367
FatI CATG 3 cut(s) 76, 264, 274
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 225
GlaI GCGC 2 cut(s) 98, 100
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 2 cut(s) 15, 118
HapII CCGG 1 cut(s) 330
HhaI GCGC 2 cut(s) 99, 101
Hin1II CATG 3 cut(s) 80, 268, 278
Hin6I GCGC 2 cut(s) 97, 99
HinP1I GCGC 2 cut(s) 97, 99
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 207, 267, 349
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 3 cut(s) 80, 268, 278
HspAI GCGC 2 cut(s) 97, 99
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 155
LpnPI CCDG 3 cut(s) 29, 132, 343
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 6 cut(s) 4, 39, 69, 110, 176, 349
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 2 cut(s) 43, 48
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 1 cut(s) 330
MvnI CGCG 2 cut(s) 99, 227
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 1 cut(s) 261
NlaIII CATG 3 cut(s) 80, 268, 278
PalAI GGCGCGCC 1 cut(s) 97
PauI GCGCGC 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 57, 116, 332
PteI GCGCGC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 3 cut(s) 57, 116, 332
SchI GAGTC 1 cut(s) 238
SetI ASST 4 cut(s) 150, 243, 319, 341
SgsI GGCGCGCC 1 cut(s) 97
SinI GGWCC 2 cut(s) 57, 332
Sse9I AATT 6 cut(s) 4, 39, 69, 110, 176, 349
SsiI CCGC 3 cut(s) 168, 211, 225
StyI CCWWGG 1 cut(s) 241
TaqI TCGA 3 cut(s) 48, 217, 260
TasI AATT 6 cut(s) 4, 39, 69, 110, 176, 349
TauI GCSGC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 17, 51, 93
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 57, 332
XapI RAATTY 3 cut(s) 4, 39, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.