Rroxscaffold_5G00364340

Heat shock factor-binding protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
45576256 .. 45576703
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364340.1

Sequence Viewer

Length: 252 bp
ATGGTTAATAGAATTGCCATGGGATTGGTGGTGCTTGCCATGTCTAGACTTACTTTTAGATTTGCTCTTTCAGTTGGTTTGCTTTGTATCCTTGACCATGATGCACTTGATGAGATGGGCAACAGGATCGAAGAGTTAGAGCAGAGCATCAATGATCTCAGAGCCGAAATGGGAGTGGAGGGCACGCCATCCCCTTCAGCCCCTTCAAAGCCCAAGGTAGATACCAAGTCAGCTGATGATTCAGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

8.97

Weight (kDa)

4.78

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
AlwI GGATC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 185
BccI CCATC 2 cut(s) 109, 196
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciVI GTATCC 1 cut(s) 98
BfaI CTAG 1 cut(s) 45
BfuI GTATCC 1 cut(s) 98
BmsI GCATC 2 cut(s) 91, 156
BsaJI CCNNGG 2 cut(s) 18, 213
BseDI CCNNGG 2 cut(s) 18, 213
BseGI GGATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 126, 154
Bsp19I CCATGG 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 18, 213
BssMI GATC 2 cut(s) 126, 154
BssT1I CCWWGG 2 cut(s) 18, 213
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 36, 185
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 2 cut(s) 129, 157
BstMBI GATC 2 cut(s) 126, 154
BstSLI GKGCMC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 36, 185
CviAII CATG 3 cut(s) 19, 40, 98
CviJI RGCY 5 cut(s) 164, 200, 211, 233, 245
CviKI_1 RGCY 5 cut(s) 164, 200, 211, 233, 245
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 128, 156
DpnII GATC 2 cut(s) 126, 154
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 18, 213
Eco57I CTGAAG 1 cut(s) 180
EcoT14I CCWWGG 2 cut(s) 18, 213
ErhI CCWWGG 2 cut(s) 18, 213
FaeI CATG 3 cut(s) 22, 43, 101
FaiI YATR 3 cut(s) 20, 41, 99
FatI CATG 3 cut(s) 18, 39, 97
FokI GGATG 1 cut(s) 175
FspBI CTAG 1 cut(s) 45
Hin1II CATG 3 cut(s) 22, 43, 101
HinfI GANTC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 204, 213
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 3 cut(s) 22, 43, 101
Kzo9I GATC 2 cut(s) 126, 154
LpnPI CCDG 1 cut(s) 109
LweI GCATC 2 cut(s) 91, 156
MaeI CTAG 1 cut(s) 45
MalI GATC 2 cut(s) 128, 156
MboI GATC 2 cut(s) 126, 154
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 12
MnlI CCTC 1 cut(s) 172
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 18
NdeII GATC 2 cut(s) 126, 154
NlaIII CATG 3 cut(s) 22, 43, 101
PfeI GAWTC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 2 cut(s) 126, 154
SduI GDGCHC 1 cut(s) 185
SetI ASST 2 cut(s) 219, 235
SfaNI GCATC 2 cut(s) 91, 156
Sse9I AATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 18, 213
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.