RLG00000007627

Heat shock factor binding protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005045
Physical Location & Seq
Forward (+)
19147371 .. 19149858
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007627

Sequence Viewer

Length: 558 bp
ATGAATTTGAATGGCCAAACCATAGAGGCTATTATGAAATTTCTTTCGAGGAGAGGACCATCTATGCAATTTGGTAAGAAAGGAAAAGTAAGGCGCGCCAATAAGCAATTAGGGCCAGAATGGTCATTTCGTTGGTTCACATATTTCCCCTCTCCGCTTCCAAATTTTACTAAACCACCACACCTTTCCCCTCCTCTCCGCACTCAACAGCCGCGAGTCTCCGAAACCTTGGCAACGCAGAGGCTTCGATCATGGAACGTGATTTTCAATGATGTTCTTGCTGGAGTATTTGGGTTTATGAGTCCTATGCGCAGACTTGAGAATCTGGTTAAAGCTGGAGGACTCACAATGTGGTGGGTCGGTGGTGTGAGATTAGCTTATCATGGTGAATGTGTCGATTTTCCTGCATATCCTGTCAAATCTGATGGACATGATACAGATGAGCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATGTCCGACTCCATCGTCTCGAAGAATATCCTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

186

Amino Acids

21.1

Weight (kDa)

10.19

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 155 - 181 3.1e-11 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
Acc16I TGCGCA 1 cut(s) 311
AccII CGCG 2 cut(s) 96, 214
AciI CCGC 3 cut(s) 155, 199, 212
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 3 cut(s) 4, 38, 163
AdeI CACNNNGTG 1 cut(s) 351
AfaI GTAC 1 cut(s) 480
AgsI TTSAA 2 cut(s) 10, 268
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 3 cut(s) 335, 377, 473
AluI AGCT 3 cut(s) 335, 377, 473
Alw26I GTCTC 2 cut(s) 223, 541
AoxI GGCC 2 cut(s) 13, 113
ApoI RAATTY 3 cut(s) 4, 38, 163
AscI GGCGCGCC 1 cut(s) 94
AspLEI GCGC 3 cut(s) 96, 98, 312
AspS9I GGNCC 2 cut(s) 56, 113
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
BccI CCATC 3 cut(s) 67, 419, 539
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 386, 420
BciT130I CCWGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 223, 541
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 56, 113
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 489
BpmI CTGGAG 3 cut(s) 303, 357, 476
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 228
BsePI GCGCGC 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 64, 183
Bsh1236I CGCG 2 cut(s) 96, 214
BshFI GGCC 2 cut(s) 15, 115
BsmAI GTCTC 2 cut(s) 223, 541
BsmBI CGTCTC 1 cut(s) 541
BsnI GGCC 2 cut(s) 15, 115
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 3 cut(s) 155, 199, 212
BspANI GGCC 2 cut(s) 15, 115
BspFNI CGCG 2 cut(s) 96, 214
BspLI GGNNCC 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 228
BssHII GCGCGC 1 cut(s) 94
BssMI GATC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 508
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 96
BstFNI CGCG 2 cut(s) 96, 214
BstHHI GCGC 3 cut(s) 96, 98, 312
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 2 cut(s) 223, 541
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstUI CGCG 2 cut(s) 96, 214
BsuRI GGCC 2 cut(s) 15, 115
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 3 cut(s) 96, 98, 312
Cfr13I GGNCC 2 cut(s) 56, 113
CsiI ACCWGGT 1 cut(s) 506
Csp6I GTAC 1 cut(s) 479
CviAII CATG 3 cut(s) 252, 383, 431
CviJI RGCY 9 cut(s) 15, 29, 115, 211, 244, 335, 377, 445, 473
CviKI_1 RGCY 9 cut(s) 15, 29, 115, 211, 244, 335, 377, 445, 473
CviQI GTAC 1 cut(s) 479
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
DraIII CACNNNGTG 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 3 cut(s) 255, 386, 434
FatI CATG 3 cut(s) 251, 382, 430
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 3 cut(s) 95, 97, 311
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 3 cut(s) 303, 357, 476
HaeIII GGCC 2 cut(s) 15, 115
HhaI GCGC 3 cut(s) 96, 98, 312
Hin1II CATG 3 cut(s) 255, 386, 434
Hin6I GCGC 3 cut(s) 94, 96, 310
HinP1I GCGC 3 cut(s) 94, 96, 310
HinfI GANTC 5 cut(s) 216, 301, 322, 342, 527
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 3 cut(s) 223, 424, 526
Hpy188III TCNNGA 2 cut(s) 514, 538
Hpy8I GTNNAC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 67, 407, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 255, 386, 434
HspAI GCGC 3 cut(s) 94, 96, 310
Kzo9I GATC 1 cut(s) 248
LweI GCATC 1 cut(s) 489
MabI ACCWGGT 1 cut(s) 506
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 2 cut(s) 479, 553
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 5 cut(s) 4, 38, 68, 107, 163
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 4 cut(s) 225, 310, 336, 521
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 8 cut(s) 19, 42, 47, 160, 201, 204, 234, 332
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MvnI CGCG 2 cut(s) 96, 214
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 248
NlaIII CATG 3 cut(s) 255, 386, 434
NlaIV GGNNCC 1 cut(s) 512
NsbI TGCGCA 1 cut(s) 311
PalAI GGCGCGCC 1 cut(s) 94
PauI GCGCGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 4 cut(s) 224, 309, 336, 521
PpsI GAGTC 4 cut(s) 224, 309, 336, 521
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 2 cut(s) 56, 113
PsyI GACNNNGTC 1 cut(s) 520
PteI GCGCGC 1 cut(s) 94
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 2 cut(s) 56, 113
SchI GAGTC 4 cut(s) 225, 310, 336, 521
ScrFI CCNGG 1 cut(s) 508
SetI ASST 7 cut(s) 186, 230, 261, 337, 379, 475, 512
SexAI ACCWGGT 1 cut(s) 506
SfaNI GCATC 1 cut(s) 489
SgsI GGCGCGCC 1 cut(s) 94
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 5 cut(s) 4, 38, 68, 107, 163
SsiI CCGC 3 cut(s) 155, 199, 212
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 47, 247, 396, 539
TasI AATT 5 cut(s) 4, 38, 68, 107, 163
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 17, 50, 543
TspRI CASTG 1 cut(s) 463
Tth111I GACNNNGTC 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 3 cut(s) 4, 38, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.