Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003930.1

Orthogroup ID

OG0005045

Physical Location & Seq

Genomic Coordinates Reverse (-)

70090 .. 74071

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003930.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtccctaaaaagacgtttcggggcatgcaagcaggctgatctgcacaagaacgagcgagctgctatgctgcaggagtgccgcaatgctgcatgggcagtaggtggcacatggctcttcactattcccctctccgcttccaaatttactaaaccaccacactctttctcctcctctccgcactcaacagccgcgagtctacaaaaccttgccaacgcggagccttcgatcatggatggacatgatacagatgacccgaaacaaagcactgctgatatgacagcttttgtacaaaatcttctccagcagatgcaaaccaggttccagacaatgtctgactccatcgtctcgaagaatatcctttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

HSBP1

Protein Analysis

122

Amino Acids

13.43

Weight (kDa)

8.71

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15802
fragaria_vesca	FvH4_2g25350 FvH4_4g18020
malus_domestica	MD03G1285000.v1.1 MD11G1304500.v1.1
prunus_persica	Prupe.1G136900_v2.0.a1 Prupe.8G258100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422221 RchiOBHm_Chr4g0422231 RchiOBHm_Chr6g0293541
rosa_laevigata	RLG00000007627 RLG00000011943
rosa_multiflora	Rmu_co8197430.1_g000001 Rmu_sc0003930.1_g000016 Rmu_sc0006269.1_g000007 Rmu_sc0014362.1_g000003 Rmu_sc0028622.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364340 Rroxscaffold_7G00174100
rosa_rugosa	Rorug04G0178900 Rorug06G0236300
rosa_samantha	Rh4AG237800 Rh4BG241000 Rh4CG252900 Rh4DG236500 Rh6AG349000 Rh6BG356400 Rh6CG363100 Rh6DG350000
rosa_wichuraiana	Rw4G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	199
AccII	CGCG	2 cut(s)	194, 218
AciI	CCGC	5 cut(s)	82, 135, 179, 192, 218
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	2 cut(s)	62, 284
AluI	AGCT	2 cut(s)	62, 284
Alw26I	GTCTC	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	62, 70, 89
ApoI	RAATTY	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbvI	GCAGC	3 cut(s)	49, 57, 76
BccI	CCATC	2 cut(s)	230, 350
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	5 cut(s)	63, 71, 82, 90, 192
BlsI	GCNGC	5 cut(s)	64, 72, 83, 91, 193
Bme1390I	CCNGG	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	222, 323
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	160, 163
BseXI	GCAGC	3 cut(s)	49, 57, 76
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	194, 218
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	40, 228
BspACI	CCGC	5 cut(s)	82, 135, 179, 192, 218
BspFNI	CGCG	2 cut(s)	194, 218
BspLI	GGNNCC	2 cut(s)	222, 323
BspMAI	CTGCAG	1 cut(s)	75
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	289
BssMI	GATC	2 cut(s)	40, 228
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	4 cut(s)	28, 32, 36, 60
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	194, 218
BstKTI	GATC	2 cut(s)	43, 231
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	40, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	71
BstUI	CGCG	2 cut(s)	194, 218
BstV1I	GCAGC	3 cut(s)	49, 57, 76
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	28, 32, 36, 60
CsiI	ACCWGGT	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	5 cut(s)	27, 93, 111, 232, 242
CviJI	RGCY	6 cut(s)	38, 62, 115, 191, 223, 284
CviKI_1	RGCY	6 cut(s)	38, 62, 115, 191, 223, 284
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	2 cut(s)	42, 230
DpnII	GATC	2 cut(s)	40, 228
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	5 cut(s)	30, 96, 114, 235, 245
FaiI	YATR	8 cut(s)	28, 68, 94, 112, 233, 243, 278, 367
FatI	CATG	5 cut(s)	26, 92, 110, 231, 241
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	5 cut(s)	63, 71, 82, 90, 192
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	63, 71, 82, 90, 192
GluI	GCNGC	5 cut(s)	63, 71, 82, 90, 192
GsuI	CTGGAG	1 cut(s)	287
Hin1II	CATG	5 cut(s)	30, 96, 114, 235, 245
HinfI	GANTC	2 cut(s)	196, 338
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	325, 349
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	30, 46, 73, 92, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	5 cut(s)	30, 96, 114, 235, 245
Kzo9I	GATC	2 cut(s)	40, 228
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	20, 59, 304, 317, 331, 338
Lsp1109I	GCAGC	3 cut(s)	49, 57, 76
LweI	GCATC	1 cut(s)	300
MabI	ACCWGGT	1 cut(s)	317
MaeII	ACGT	1 cut(s)	16
MalI	GATC	2 cut(s)	42, 230
MboI	GATC	2 cut(s)	40, 228
MboII	GAAGA	3 cut(s)	109, 290, 364
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	205, 332
MnlI	CCTC	3 cut(s)	140, 181, 184
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	2 cut(s)	194, 218
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	40, 228
NlaIII	CATG	5 cut(s)	30, 96, 114, 235, 245
NlaIV	GGNNCC	2 cut(s)	222, 323
NspI	RCATGY	1 cut(s)	30
PaeI	GCATGC	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	64, 72, 83, 91, 193
PleI	GAGTC	2 cut(s)	204, 332
PpsI	GAGTC	2 cut(s)	204, 332
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	222, 323
PstI	CTGCAG	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	5 cut(s)	63, 71, 82, 90, 192
Sau3AI	GATC	2 cut(s)	40, 228
SchI	GAGTC	2 cut(s)	205, 332
ScrFI	CCNGG	1 cut(s)	319
SetI	ASST	6 cut(s)	19, 64, 106, 210, 286, 323
SexAI	ACCWGGT	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	5 cut(s)	82, 135, 179, 192, 218
StyD4I	CCNGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	227, 350
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	2 cut(s)	84, 194
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	3 cut(s)	62, 70, 89
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.