RchiOBHm_Chr6g0293541

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005045
Physical Location & Seq
Reverse (-)
56194965 .. 56196609
1645 bp
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UTR
Exon/CDS
Intron
PRQ26339

Sequence Viewer

Length: 333 bp
ATGGACGGGCACGATTCGGAGGATTCGAAGCAGAGCACTGCTGATATGTCTGCTTTTGTGCAAAATCTGCTTCAACAGATGCAAACTAGGTTCCAATCGATGTCTGACAACATTGTTACAAAGAATATCCTTTTCTCTGATTCTTCAAGTTATAAGCAATCATCTTTGCATGCTAGGGTGTGCATTGCCCAAGTTATGGGAAACCGCATTAACGAGTTGGAACGTAGCATCGGTGACCTAAGAACAGAGATGGGAATCGAAGGCTCTCCATCTCCCGCCCCCCAGTCCAAGTCTGATGAAGATGGAGGGAAGCAAGATGAAGGTTCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

4.61

Isoelectric Point (pI)

93.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 41 1.2e-10 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 2 cut(s) 205, 276
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 74, 147
Alw21I GWGCWC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 3 cut(s) 244, 277, 296
BfaI CTAG 2 cut(s) 87, 174
BmiI GGNNCC 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 69, 237
BmuI ACTGGG 1 cut(s) 277
Bpu14I TTCGAA 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 98
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 12, 38
BspACI CCGC 2 cut(s) 205, 276
BspDI ATCGAT 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 239
BstEII GGTNACC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 98
CviAII CATG 2 cut(s) 170, 330
CviJI RGCY 1 cut(s) 264
CviKI_1 RGCY 1 cut(s) 264
DdeI CTNAG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
FaeI CATG 2 cut(s) 173, 333
FaiI YATR 5 cut(s) 47, 153, 171, 197, 331
FatI CATG 2 cut(s) 169, 329
FauI CCCGC 1 cut(s) 283
FspBI CTAG 2 cut(s) 87, 174
Hin1II CATG 2 cut(s) 173, 333
HinfI GANTC 4 cut(s) 14, 23, 140, 255
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 19, 106, 139, 295
HpyAV CCTTC 2 cut(s) 254, 314
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 61, 82, 169, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 173, 333
LpnPI CCDG 1 cut(s) 296
LweI GCATC 2 cut(s) 69, 237
MaeI CTAG 2 cut(s) 87, 174
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 115, 233
MboII GAAGA 2 cut(s) 135, 311
MhlI GDGCHC 2 cut(s) 12, 38
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 2 cut(s) 13, 299
MseI TTAA 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 173, 333
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 26
PaeI GCATGC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 4 cut(s) 14, 23, 140, 255
PflMI CCANNNNNTGG 1 cut(s) 196
PsiI TTATAA 1 cut(s) 153
PspEI GGTNACC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 210
SduI GDGCHC 2 cut(s) 12, 38
SetI ASST 4 cut(s) 92, 226, 240, 325
SfaNI GCATC 2 cut(s) 69, 237
SfuI TTCGAA 1 cut(s) 26
SphI GCATGC 1 cut(s) 173
SsiI CCGC 2 cut(s) 205, 276
SspMI CTAG 2 cut(s) 87, 174
TaiI ACGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 26, 98, 258
TfiI GAWTC 4 cut(s) 14, 23, 140, 255
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 312, 333
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 196
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 87, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.