Rorug06G0236300

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005045
Physical Location & Seq
Forward (+)
37848810 .. 37849219
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0236300.1

Sequence Viewer

Length: 321 bp
ATGTCTGAGAAAGCAGAGGAGGAAGTGTTTATTGGGGCAATTGACCAAGGAACCACCAACACCAGACTCATAATCTATGATCATTTGGCATACCCAGTTGGGTCTCACCAGGTCGAGTTCACTCAGTTCTACCCAGAAGCAGGATGGGTGGAGCATGATCCAATGGAGATATTGGAGAGCGTGACACTTTGTATGGCTATGGCTCTGGACAAAGCCACAGCCAACGGGCACAATGTCGATGGTGGATTGAAGGCGATTGGGTTGACCAATCAGAGAGATACCACTCTCGTTTGGAACAAATCCACTGGCTGTCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

4.6

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 11 - 102 3.8e-19 FGGY family of carbohydrate kinases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 231
BccI CCATC 2 cut(s) 138, 233
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 95, 310
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 95, 310
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 79, 157
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 95, 310
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 79, 157
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 6, 123
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 2 cut(s) 82, 160
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 79, 157
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 303
CsiI ACCWGGT 1 cut(s) 108
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 197, 203, 215, 221, 309
CviKI_1 RGCY 5 cut(s) 197, 203, 215, 221, 309
DdeI CTNAG 2 cut(s) 6, 123
DpnI GATC 2 cut(s) 81, 159
DpnII GATC 2 cut(s) 79, 157
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 71, 78, 91, 156, 194, 200
FatI CATG 1 cut(s) 154
FbaI TGATCA 1 cut(s) 79
FokI GGATG 1 cut(s) 156
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 120, 264
Hpy188I TCNGA 2 cut(s) 7, 273
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 120, 264
HpyAV CCTTC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 6, 123
Hsp92II CATG 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 157
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 8 cut(s) 76, 95, 108, 122, 126, 147, 191, 291
MabI ACCWGGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 81, 159
MboI GATC 2 cut(s) 79, 157
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 2 cut(s) 10, 13
MseI TTAA 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 110
NdeII GATC 2 cut(s) 79, 157
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 181
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 319
Sau3AI GATC 2 cut(s) 79, 157
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 231
SetI ASST 1 cut(s) 114
SexAI ACCWGGT 1 cut(s) 108
Sse9I AATT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 2 cut(s) 114, 237
TasI AATT 1 cut(s) 39
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspRI CASTG 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.