Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005045

Physical Location & Seq

Genomic Coordinates Forward (+)

13869402 .. 13870991

Gene Structure 1590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGACGGGCACGATTCGGAGGATTCGAAGCAGAGCACTGCTGATATGTCTGCTTTTGTGCAAAATCTGCTTCAACAGATGCAAACTAGGTTCCAATCGATGTCTGACAACATTGTTACAAAGATTGATGAGATGGGAAACCGCATTAACGAGTTGGAACGTAGCATCGGTGACCTAAGAACAGAGATGGGGATCGAAGGCTCTCCATCTCCCGCCCCCCAGTCCAAGCCTGGTGAAGATGGAGGGAAGCAAGATGAAGGTTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005829 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010286 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0034605 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070370

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

HSBP1

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

4.31

Isoelectric Point (pI)

88.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSBP1	PF06825	15 - 62	1.5e-23	Heat shock factor binding protein 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15802
fragaria_vesca	FvH4_2g25350 FvH4_4g18020
malus_domestica	MD03G1285000.v1.1 MD11G1304500.v1.1
prunus_persica	Prupe.1G136900_v2.0.a1 Prupe.8G258100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422221 RchiOBHm_Chr4g0422231 RchiOBHm_Chr6g0293541
rosa_laevigata	RLG00000007627 RLG00000011943
rosa_multiflora	Rmu_co8197430.1_g000001 Rmu_sc0003930.1_g000016 Rmu_sc0006269.1_g000007 Rmu_sc0014362.1_g000003 Rmu_sc0028622.1_g000002
rosa_roxburghii	Rroxscaffold_5G00364340 Rroxscaffold_7G00174100
rosa_rugosa	Rorug04G0178900 Rorug06G0236300
rosa_samantha	Rh4AG237800 Rh4BG241000 Rh4CG252900 Rh4DG236500 Rh6AG349000 Rh6BG356400 Rh6CG363100 Rh6DG350000
rosa_wichuraiana	Rw4G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	142, 213
AclWI	GGATC	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	182, 245
AsuII	TTCGAA	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	4 cut(s)	127, 181, 214, 233
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	69, 174
BmuI	ACTGGG	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	12, 38
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	142, 213
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	176
BstEII	GGTNACC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	98
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	2 cut(s)	201, 229
CviKI_1	RGCY	2 cut(s)	201, 229
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	270
FaiI	YATR	2 cut(s)	47, 268
FatI	CATG	1 cut(s)	266
FauI	CCCGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	14, 23
HphI	GGTGA	2 cut(s)	182, 245
Hpy188I	TCNGA	2 cut(s)	19, 106
HpyAV	CCTTC	2 cut(s)	191, 251
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	61, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	216, 233, 243
LweI	GCATC	2 cut(s)	69, 174
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	115, 170
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	12, 38
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	2 cut(s)	13, 236
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	14, 23
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	12, 38
SetI	ASST	4 cut(s)	92, 163, 177, 262
SfaNI	GCATC	2 cut(s)	69, 174
SfuI	TTCGAA	1 cut(s)	26
SsiI	CCGC	2 cut(s)	142, 213
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	229
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	26, 98, 195
TfiI	GAWTC	2 cut(s)	14, 23
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.