Rmu_sc0006269.1_g000007

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006269.1
Physical Location & Seq
Forward (+)
27367 .. 28458
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006269.1_g000007.1.cds

Sequence Viewer

Length: 285 bp
atggacggccacgattcggaggattcgaagcagagcactgctgatatgtctgcttttgtgcaaaatctgcttcaacagatgcaaactaggttccaatcgatgtctgacaacattgttacaaagaatatccttttctctgattcttcaagctataagcaatcatctttgcatgctagggtcatcggtgacctaagaacagagatgggaattgaaggctctccatcccccgccccccagtccaagtctgatgaagatggagggaagcaagatgaaggttcagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.2

Weight (kDa)

4.5

Isoelectric Point (pI)

105.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 74, 147, 212
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 38
AoxI GGCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 3 cut(s) 196, 229, 248
BceAI ACGGC 1 cut(s) 22
BfaI CTAG 2 cut(s) 87, 174
BmiI GGNNCC 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 229
Bpu14I TTCGAA 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 98
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 235
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 9
BspDI ATCGAT 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 98
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 98
CviAII CATG 2 cut(s) 170, 282
CviJI RGCY 3 cut(s) 9, 150, 216
CviKI_1 RGCY 3 cut(s) 9, 150, 216
DdeI CTNAG 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
FaeI CATG 2 cut(s) 173, 285
FaiI YATR 4 cut(s) 47, 153, 171, 283
FatI CATG 2 cut(s) 169, 281
FauI CCCGC 1 cut(s) 235
FokI GGATG 1 cut(s) 208
FspBI CTAG 2 cut(s) 87, 174
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 2 cut(s) 173, 285
HinfI GANTC 3 cut(s) 14, 23, 140
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 4 cut(s) 19, 106, 139, 247
HpyAV CCTTC 2 cut(s) 206, 266
HpyCH4V TGCA 3 cut(s) 61, 82, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 2 cut(s) 173, 285
LpnPI CCDG 1 cut(s) 248
LweI GCATC 1 cut(s) 69
MaeI CTAG 2 cut(s) 87, 174
MaeIII GTNAC 2 cut(s) 115, 185
MboII GAAGA 2 cut(s) 135, 263
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 207
MnlI CCTC 2 cut(s) 13, 251
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 173, 285
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 26
PaeI GCATGC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 3 cut(s) 14, 23, 140
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 92, 152, 192, 277
SfaNI GCATC 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 26
SgeI CNNG 9 cut(s) 23, 99, 159, 182, 186, 239, 247, 253, 278
SphI GCATGC 1 cut(s) 173
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 228
SspMI CTAG 2 cut(s) 87, 174
TaqI TCGA 2 cut(s) 26, 98
TasI AATT 1 cut(s) 207
TfiI GAWTC 3 cut(s) 14, 23, 140
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 264, 285
TspRI CASTG 1 cut(s) 43
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 87, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.