Rh4AG237800

Heat shock factor-binding protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005045
Physical Location & Seq
Reverse (-)
54356418 .. 54360515
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG237800.1

Sequence Viewer

Length: 411 bp
ATGGTCATTTTGTTGCTACACAAAGCTCTTCACTATTCCCCTCTCCGCTTCCAAATTACTAAACCACCACACCATTCTCCTCCTCTCCGCACTCGAACAGCCGCGAGTCTCCAAAACCTTGGCAACGCAGAGCCTTCGATCATGGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATGTCTGACTCCATCGTCTCGAAGATTGATGAGATGGGCAACAGGATCGAGGAGTTAGAGCAGAGCATCAATGATCTCAGAGCCGAAATGGGAGTGGACGGCACGCCATCCCCTTCAGCCCCTTCAAAGCCCAAGGTAGATACCAAGTCAGCTGATGATTCAGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

136

Amino Acids

15.01

Weight (kDa)

5.66

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 62 - 109 9.8e-24 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 46, 88, 102
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 201
AgsI TTSAA 1 cut(s) 366
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 3 cut(s) 26, 194, 392
AluI AGCT 3 cut(s) 26, 194, 392
Alw26I GTCTC 2 cut(s) 113, 262
AlwI GGATC 1 cut(s) 293
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BccI CCATC 4 cut(s) 140, 260, 268, 355
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 268, 302
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 113, 262
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 210, 315
BpmI CTGGAG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 118, 372
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 118, 372
BseGI GGATG 2 cut(s) 151, 347
BseMII CTCAG 1 cut(s) 331
BseRI GAGGAG 3 cut(s) 69, 72, 305
Bsh1236I CGCG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 113, 262
BsmBI CGTCTC 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 138, 285, 313
BspACI CCGC 3 cut(s) 46, 88, 102
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 118, 372
BssMI GATC 3 cut(s) 138, 285, 313
BssT1I CCWWGG 2 cut(s) 118, 372
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 151, 347
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 141, 288, 316
BstMAI GTCTC 2 cut(s) 113, 262
BstMBI GATC 3 cut(s) 138, 285, 313
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 151, 347
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 227
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 142, 152
CviJI RGCY 9 cut(s) 26, 101, 133, 194, 323, 359, 370, 392, 404
CviKI_1 RGCY 9 cut(s) 26, 101, 133, 194, 323, 359, 370, 392, 404
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 317
DpnI GATC 3 cut(s) 140, 287, 315
DpnII GATC 3 cut(s) 138, 285, 313
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 118, 372
Eco57I CTGAAG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 118, 372
ErhI CCWWGG 2 cut(s) 118, 372
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 2 cut(s) 145, 155
FaiI YATR 3 cut(s) 143, 153, 188
FatI CATG 2 cut(s) 141, 151
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 158, 334
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 2 cut(s) 145, 155
HinfI GANTC 3 cut(s) 106, 248, 398
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 247, 320
Hpy188III TCNNGA 2 cut(s) 235, 259
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 3 cut(s) 144, 363, 372
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 2 cut(s) 145, 155
Kzo9I GATC 3 cut(s) 138, 285, 313
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 214, 227, 241, 248, 268
LweI GCATC 2 cut(s) 210, 315
MabI ACCWGGT 1 cut(s) 227
MalI GATC 3 cut(s) 140, 287, 315
MboI GATC 3 cut(s) 138, 285, 313
MboII GAAGA 3 cut(s) 20, 200, 274
MluCI AATT 1 cut(s) 54
MlyI GAGTC 2 cut(s) 115, 242
MnlI CCTC 4 cut(s) 51, 90, 93, 283
MspA1I CMGCKG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 104
NdeII GATC 3 cut(s) 138, 285, 313
NlaIII CATG 2 cut(s) 145, 155
NlaIV GGNNCC 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 398
PflFI GACNNNGTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 114, 242
PpsI GAGTC 2 cut(s) 114, 242
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 138, 285, 313
SchI GAGTC 2 cut(s) 115, 242
ScrFI CCNGG 1 cut(s) 229
SetI ASST 6 cut(s) 28, 120, 196, 233, 378, 394
SexAI ACCWGGT 1 cut(s) 227
SfaNI GCATC 2 cut(s) 210, 315
Sse9I AATT 1 cut(s) 54
SsiI CCGC 3 cut(s) 46, 88, 102
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 118, 372
TaqI TCGA 4 cut(s) 94, 137, 260, 288
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 398
TscAI CASTG 1 cut(s) 184
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.