RLG00000011943

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005045
Physical Location & Seq
Forward (+)
13963941 .. 13966047
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011943

Sequence Viewer

Length: 615 bp
ATGGACGGGCACGATTCGGAGGATTCGAAGCAGAGCACTGCTGATATGTCTGCTTTTGTGCAAAATCTGCTTCAACAGATGCAAACTAGGTTCCAATCGATGTCCGACAACATTATGGGAAACCGCATTAACGAGTTGGAACGTAGCATCGGTGACCTAAGAACAGAGATGGGAATCGAAGGCTCTCCATCTCCCGCCCCCCAGTCCAAGTCCGATGAAGATGGAGGGAAGCAAGATGAAGCGAGTGATGGCACTGCAACCACGGTTGTAGGGGTTCGCCTGTGCGCCGGGCTTGCAGTTGTAGTAGGAAGCACCCCTCCGAGAGCATGGCACAGTGTTCCTCTGCAGAGCTCCATAGCTGATGTACTTTGTGGTGGCCAAGATACGCCTGTTGATCTCAGAGTCCATCTCAAACTCATCTTCAGCCATGCACTCTGCAATGGAACCCTGGCAGCGGGCCTTGGCTGGAATGAAGCTCAACCCGTGATCGCTGCCATTGCTTGCATCGATGATCACGGCTGTGAAGAACAAGCAGAAGGTCAAGAAGGGAATAATGGAAGAGGACTTTGCCATTTGCTTCTGCTATGCCTTCTTGTTTTTCCTTTTGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

205

Amino Acids

21.61

Weight (kDa)

4.61

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 56 1e-13 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 124, 195, 455
AcoI YGGCCR 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 406
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 447
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 3 cut(s) 351, 359, 476
AluI AGCT 3 cut(s) 351, 359, 476
Alw21I GWGCWC 2 cut(s) 38, 353
AoxI GGCC 2 cut(s) 376, 457
ApeKI GCWGC 2 cut(s) 452, 491
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 12
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BalI TGGCCA 1 cut(s) 378
BanII GRGCYC 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 38, 353
BbvI GCAGC 2 cut(s) 464, 478
BccI CCATC 5 cut(s) 163, 196, 215, 242, 414
BceAI ACGGC 1 cut(s) 532
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 344
BisI GCNGC 2 cut(s) 453, 492
BlsI GCNGC 2 cut(s) 454, 493
Bme1390I CCNGG 2 cut(s) 289, 449
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 92, 445
BmrFI CCNGG 2 cut(s) 289, 449
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 69, 156, 513
BmuI ACTGGG 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 393, 425
Bpu14I TTCGAA 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 289
Bsa29I ATCGAT 2 cut(s) 98, 507
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 261, 447, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 2 cut(s) 445, 495
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 1 cut(s) 449
BseCI ATCGAT 2 cut(s) 98, 507
BseDI CCNNGG 3 cut(s) 261, 447, 460
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMI GCAATG 2 cut(s) 445, 495
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 2 cut(s) 464, 478
BshFI GGCC 2 cut(s) 378, 459
BshVI ATCGAT 2 cut(s) 98, 507
BsiHKAI GWGCWC 2 cut(s) 38, 353
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 454
BsnI GGCC 2 cut(s) 378, 459
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 12, 38, 353
Bsp143I GATC 3 cut(s) 394, 486, 511
BspACI CCGC 3 cut(s) 124, 195, 455
BspANI GGCC 2 cut(s) 378, 459
BspCNI CTCAG 1 cut(s) 411
BspDI ATCGAT 2 cut(s) 98, 507
BspLI GGNNCC 2 cut(s) 92, 445
BspMAI CTGCAG 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 445, 495
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 261, 447, 460
BssMI GATC 3 cut(s) 394, 486, 511
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 265, 335
Bst6I CTCTTC 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 294, 457, 502
BstDEI CTNAG 2 cut(s) 158, 398
BstDSI CCRYGG 1 cut(s) 261
BstEII GGTNACC 1 cut(s) 152
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 397, 489, 514
BstMBI GATC 3 cut(s) 394, 486, 511
BstMWI GCNNNNNNNGC 3 cut(s) 67, 293, 497
BstNI CCWGG 1 cut(s) 449
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 287, 447
BstSFI CTRYAG 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 464, 478
Bsu15I ATCGAT 2 cut(s) 98, 507
BsuRI GGCC 2 cut(s) 378, 459
BsuTUI ATCGAT 2 cut(s) 98, 507
BtgI CCRYGG 1 cut(s) 261
BtsI GCAGTG 2 cut(s) 36, 252
BtsIMutI CAGTG 3 cut(s) 36, 252, 340
Cac8I GCNNGC 3 cut(s) 294, 457, 502
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 457
ClaI ATCGAT 2 cut(s) 98, 507
Csp6I GTAC 1 cut(s) 365
CviAII CATG 2 cut(s) 327, 428
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 158, 398
DpnI GATC 3 cut(s) 396, 488, 513
DpnII GATC 3 cut(s) 394, 486, 511
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 351
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 330, 431
FaiI YATR 6 cut(s) 47, 116, 328, 356, 429, 586
FatI CATG 2 cut(s) 326, 427
FauI CCCGC 2 cut(s) 202, 448
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 453, 492
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 453, 492
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 286
GluI GCNGC 2 cut(s) 453, 492
HaeIII GGCC 2 cut(s) 378, 459
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 330, 431
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 4 cut(s) 14, 23, 174, 402
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 5 cut(s) 19, 106, 214, 321, 401
Hpy188III TCNNGA 1 cut(s) 542
HpyAV CCTTC 4 cut(s) 173, 530, 539, 599
HpyCH4III ACNGT 2 cut(s) 265, 335
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 8 cut(s) 61, 82, 257, 296, 346, 431, 438, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 293, 497
HpyF3I CTNAG 2 cut(s) 158, 398
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 330, 431
HspAI GCGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 394, 486, 511
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 7 cut(s) 215, 293, 301, 402, 434, 451, 461
Lsp1109I GCAGC 2 cut(s) 464, 478
LweI GCATC 3 cut(s) 69, 156, 513
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 396, 488, 513
MboI GATC 3 cut(s) 394, 486, 511
MboII GAAGA 4 cut(s) 230, 412, 536, 570
MhlI GDGCHC 3 cut(s) 12, 38, 353
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 2 cut(s) 117, 129
MnlI CCTC 5 cut(s) 13, 218, 327, 351, 554
Mox20I TGGCCA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 378
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 289, 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 67, 293, 497
NciI CCSGG 1 cut(s) 289
NdeII GATC 3 cut(s) 394, 486, 511
NlaIII CATG 2 cut(s) 330, 431
NlaIV GGNNCC 2 cut(s) 92, 445
NmuCI GTSAC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 3 cut(s) 14, 23, 174
PkrI GCNGC 2 cut(s) 454, 493
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 92, 445
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 348
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 453, 492
Sau3AI GATC 3 cut(s) 394, 486, 511
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 289, 449
SduI GDGCHC 3 cut(s) 12, 38, 353
SetI ASST 7 cut(s) 92, 145, 159, 353, 361, 478, 541
SfaNI GCATC 3 cut(s) 69, 156, 513
SfcI CTRYAG 1 cut(s) 344
SfuI TTCGAA 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 519
SsiI CCGC 3 cut(s) 124, 195, 455
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 287, 447
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 2 cut(s) 265, 335
TaiI ACGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 26, 98, 177, 507
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 3 cut(s) 14, 23, 174
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 3 cut(s) 43, 259, 340
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 452, 491
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 231, 252, 486
TspRI CASTG 3 cut(s) 43, 259, 340
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.