Rw4G020580

Heat shock factor-binding protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005045
Physical Location & Seq
Reverse (-)
44603149 .. 44606611
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020580.1

Sequence Viewer

Length: 270 bp
ATGGATGGACATGATACAGATGACCCGAAACAAAGCACTGCTGATATGACAGCTTTTGTACAAAATCTTCTCCAGCAGATGCAAACCAGGTTCCAGACAATGTCTGACTCCATCGTCTCGAAGATTGATGAGATGGGCAACAGGATCGAGGAGTTAGAGCAGAGCATCAATGATCTCAGAGCCGAAATGGGAGTGGACGGCACGCCATCCCCTTCAGCCCCTTCAAAGCCCAAGGTAGATACCAAGTCAGCTGATGATTCAGCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 map04212
Pfam Domains
Protein Families
HSBP1

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

4.34

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSBP1 PF06825 15 - 62 3.6e-24 Heat shock factor binding protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AclWI GGATC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 225
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 2 cut(s) 53, 251
AluI AGCT 2 cut(s) 53, 251
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BccI CCATC 3 cut(s) 119, 127, 214
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 69, 174
BpmI CTGGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 10, 206
BseMII CTCAG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 144, 172
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 144, 172
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 88
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 10, 206
BstKTI GATC 2 cut(s) 147, 175
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 144, 172
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BtsCI GGATG 2 cut(s) 10, 206
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 203
CsiI ACCWGGT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 53, 182, 218, 229, 251
CviKI_1 RGCY 5 cut(s) 53, 182, 218, 229, 251
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 146, 174
DpnII GATC 2 cut(s) 144, 172
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 47
FatI CATG 1 cut(s) 10
FokI GGATG 2 cut(s) 17, 193
GsuI CTGGAG 1 cut(s) 56
Hin1II CATG 1 cut(s) 14
HinfI GANTC 2 cut(s) 107, 257
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 106, 179
Hpy188III TCNNGA 2 cut(s) 94, 118
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 222, 231
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 2 cut(s) 144, 172
LpnPI CCDG 5 cut(s) 73, 86, 100, 107, 127
LweI GCATC 2 cut(s) 69, 174
MabI ACCWGGT 1 cut(s) 86
MalI GATC 2 cut(s) 146, 174
MboI GATC 2 cut(s) 144, 172
MboII GAAGA 2 cut(s) 59, 133
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
NdeII GATC 2 cut(s) 144, 172
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 92
PsyI GACNNNGTC 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 144, 172
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 88
SetI ASST 4 cut(s) 55, 92, 237, 253
SexAI ACCWGGT 1 cut(s) 86
SfaNI GCATC 2 cut(s) 69, 174
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 2 cut(s) 119, 147
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 43
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.