Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

12722912 .. 12725835

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCTGCGGTTACGACTCTCTAAGCGGTGAGGGAGCCACATCTAGTGGTGGTGGAGGAGTAGGAAGGAGTAAAGGAGTTGGAGCGAAGATAAGGTATAGAGAGTGCTTGAAGAACCATGCTGTTAACATAGGTGGCCACGCCGTGGACGGTTGTTGCGAGTTTATGCCTTCCGGTGAAGATGGAACGCTCGACGCTCTTAAGTGTGCAGCTTGCGGCTGCCACCGCAACTTCCACCGCAAGGAAACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAGCCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCCGCGGCGCCTTACAGGCCACCCGCGGCATCGGGGGACGAGGAGGATACATCAAATCCTAGCAGCAGCGGCGGGACCACGAAGAGGTTTAGAACGAAGTTCACGGCGGAACAGAAAGAGAAGATGTTAGCCTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTTCTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAACTCTCTTGGTAAGAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

220

Amino Acids

24.02

Weight (kDa)

8.1

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	47 - 99	5.1e-31	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	2 cut(s)	395, 416
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	4, 546
AcyI	GRCGYC	1 cut(s)	398
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	4 cut(s)	56, 193, 289, 474
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	584, 598
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	184, 407
ApeKI	GCWGC	5 cut(s)	257, 267, 352, 453, 456
ApoI	RAATTY	2 cut(s)	4, 546
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	89, 236
AvaII	GGWCC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	319
BbvI	GCAGC	5 cut(s)	254, 269, 364, 465, 468
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	176, 510
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	584, 598
BfaI	CTAG	2 cut(s)	93, 450
BfoI	RGCGCY	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	465
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	3 cut(s)	85, 399, 466
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	4 cut(s)	312, 367, 428, 615
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	192, 393, 414
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 193, 289, 474
Bse1I	ACTGG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	192, 393, 414
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	4 cut(s)	56, 193, 289, 474
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	120, 446
BseXI	GCAGC	5 cut(s)	254, 269, 364, 465, 468
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	395, 416
BshFI	GGCC	2 cut(s)	186, 409
BshNI	GGYRCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	2 cut(s)	440, 478
BslI	CCNNNNNNNGG	4 cut(s)	56, 193, 289, 474
BsmAI	GTCTC	2 cut(s)	584, 598
BsmFI	GGGAC	2 cut(s)	440, 478
BsnI	GGCC	2 cut(s)	186, 409
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	186, 409
BspFNI	CGCG	2 cut(s)	395, 416
BspLI	GGNNCC	3 cut(s)	85, 399, 466
BspPI	GGATC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	3 cut(s)	192, 393, 414
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	398
BstAFI	CTTAAG	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	262, 347
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	3 cut(s)	192, 393, 414
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	2 cut(s)	395, 416
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	584, 598
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	6 cut(s)	273, 355, 361, 364, 406, 459
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstUI	CGCG	2 cut(s)	395, 416
BstV1I	GCAGC	5 cut(s)	254, 269, 364, 465, 468
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	186, 409
BtgI	CCRYGG	3 cut(s)	192, 393, 414
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	630
Cac8I	GCNNGC	2 cut(s)	262, 347
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	465
Cfr42I	CCGCGG	2 cut(s)	396, 417
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	167, 557
CviJI	RGCY	9 cut(s)	86, 186, 260, 267, 317, 355, 364, 409, 521
CviKI_1	RGCY	9 cut(s)	86, 186, 260, 267, 317, 355, 364, 409, 521
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	71
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
EciI	GGCGGA	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	367
EcoRV	GATATC	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	319
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
FaeI	CATG	2 cut(s)	170, 560
FaiI	YATR	7 cut(s)	29, 147, 168, 179, 215, 558, 630
FaqI	GGGAC	2 cut(s)	440, 478
FatI	CATG	2 cut(s)	166, 556
FauI	CCCGC	4 cut(s)	354, 400, 421, 455
FokI	GGATG	1 cut(s)	637
FriOI	GRGCYC	1 cut(s)	319
FspBI	CTAG	2 cut(s)	93, 450
GlaI	GCGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	186, 409
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	2 cut(s)	170, 560
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	65
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	89, 236
Hpy166II	GTNNAC	3 cut(s)	175, 196, 492
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	2 cut(s)	17, 622
Hpy8I	GTNNAC	3 cut(s)	175, 196, 492
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	108, 228
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	332, 564
HpyCH4V	TGCA	2 cut(s)	257, 628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	273, 355, 361, 364, 406, 459
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	332, 564
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	170, 560
HspAI	GCGC	1 cut(s)	398
KasI	GGCGCC	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	175
KspI	CCGCGG	2 cut(s)	396, 417
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	83, 131
LpnPI	CCDG	8 cut(s)	24, 67, 235, 354, 381, 391, 579, 607
Lsp1109I	GCAGC	5 cut(s)	254, 269, 364, 465, 468
LweI	GCATC	4 cut(s)	312, 367, 428, 615
MaeI	CTAG	2 cut(s)	93, 450
MaeII	ACGT	2 cut(s)	332, 564
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	8 cut(s)	32, 35, 148, 172, 239, 368, 484, 523
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	2 cut(s)	4, 546
MluNI	TGGCCA	1 cut(s)	186
Mly113I	GGCGCC	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	7 cut(s)	4, 73, 98, 424, 427, 468, 525
Mox20I	TGGCCA	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	4 cut(s)	45, 174, 249, 615
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	3 cut(s)	395, 416, 459
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	2 cut(s)	395, 416
MwoI	GCNNNNNNNGC	6 cut(s)	273, 355, 361, 364, 406, 459
NarI	GGCGCC	1 cut(s)	398
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	170, 560
NlaIV	GGNNCC	3 cut(s)	85, 399, 466
NsiI	ATGCAT	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	193
PleI	GAGTC	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	85, 399, 466
PspPI	GGNCC	1 cut(s)	465
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacII	CCGCGG	2 cut(s)	396, 417
SaqAI	TTAA	4 cut(s)	45, 174, 249, 615
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	43, 146, 184, 262, 335, 479, 536, 567
SfaNI	GCATC	4 cut(s)	312, 367, 428, 615
SfoI	GGCGCC	1 cut(s)	399
Sfr303I	CCGCGG	2 cut(s)	396, 417
SgrBI	CCGCGG	2 cut(s)	396, 417
SinI	GGWCC	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	4, 546
SspDI	GGCGCC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	93, 450
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	335, 567
TaqI	TCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	4, 546
TauI	GCSGC	7 cut(s)	267, 352, 358, 367, 398, 419, 462
Tru1I	TTAA	4 cut(s)	45, 174, 249, 615
Tru9I	TTAA	4 cut(s)	45, 174, 249, 615
TseI	GCWGC	5 cut(s)	257, 267, 352, 453, 456
TspDTI	ATGAA	2 cut(s)	17, 368
Van91I	CCANNNNNTGG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	4, 546
XspI	CTAG	2 cut(s)	93, 450
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.