Rh2CG234200

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002915
Physical Location & Seq
Reverse (-)
24043815 .. 24044633
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG234200.1

Sequence Viewer

Length: 819 bp
ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGAGGAGGAGGGGGTGGCAGAGTCAGAATGGCGAGTTCCGCAGCCGAAGCGGCTGCTTCGGCTGCGGCTCAGCTACAACAACAACAACAGCAGACAAGGAGGGCGTGCAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAAGGAGACCGACGAGCCTTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACGGGGGGTTCGGGCACCCGCAATTCTCGGCGAGTGGCGGGTACTACCGCACTCCCGGCGGGTACCTGCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACATCGGGCGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGCGGCGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGATCGGCTGGGGTGGAGGATTCAGAAGCAGGACGAGGCGGCGGTGCAGAGCTTCTGCGACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGGCAAGAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

272

Amino Acids

29.33

Weight (kDa)

6.65

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 63 - 115 3.9e-28 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 620
Acc36I ACCTGC 2 cut(s) 180, 483
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 3 cut(s) 367, 423, 471
AccB7I CCANNNNNTGG 1 cut(s) 220
AccI GTMKAC 1 cut(s) 515
AccII CGCG 4 cut(s) 239, 269, 293, 308
AclWI GGATC 3 cut(s) 21, 546, 693
AcoI YGGCCR 1 cut(s) 264
AcvI CACGTG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 617
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 452, 473
AfiI CCNNNNNNNGG 7 cut(s) 220, 268, 337, 377, 412, 569, 630
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 208
AhdI GACNNNNNGTC 1 cut(s) 553
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 2 cut(s) 261, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 4 cut(s) 154, 364, 679, 735
AluI AGCT 4 cut(s) 154, 364, 679, 735
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 335, 740
AlwI GGATC 3 cut(s) 21, 546, 693
AoxI GGCC 3 cut(s) 264, 379, 497
ApeKI GCWGC 5 cut(s) 122, 134, 143, 490, 508
Asp700I GAANNNNTTC 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 471
AspLEI GCGC 4 cut(s) 241, 295, 305, 508
AspS9I GGNCC 2 cut(s) 379, 639
AsuC2I CCSGG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 639
BaeGI GKGCMC 2 cut(s) 237, 426
BanI GGYRCC 3 cut(s) 367, 423, 471
BbrPI CACGTG 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 121, 130, 134, 495, 502
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 203, 496
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 2 cut(s) 263, 377
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 335, 740
BfoI RGCGCY 1 cut(s) 509
BfuAI ACCTGC 2 cut(s) 180, 483
BglI GCCNNNNNGGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 3 cut(s) 263, 377, 465
Bme18I GGWCC 1 cut(s) 639
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 379, 639
BmiI GGNNCC 5 cut(s) 48, 274, 369, 425, 473
BmrFI CCNGG 3 cut(s) 263, 377, 465
BmsI GCATC 2 cut(s) 660, 771
BpmI CTGGAG 1 cut(s) 695
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 617
BsaI GGTCTC 2 cut(s) 335, 740
BsaJI CCNNGG 6 cut(s) 219, 267, 276, 376, 409, 802
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 268, 337, 377, 412, 569, 630
BseBI CCWGG 2 cut(s) 263, 377
BseDI CCNNGG 6 cut(s) 219, 267, 276, 376, 409, 802
BseGI GGATG 2 cut(s) 675, 786
BseLI CCNNNNNNNGG 7 cut(s) 220, 268, 337, 377, 412, 569, 630
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 6 cut(s) 35, 47, 96, 99, 102, 597
BseSI GKGCMC 2 cut(s) 237, 426
BseXI GCAGC 5 cut(s) 121, 130, 134, 495, 502
BseYI CCCAGC 2 cut(s) 563, 691
BsgI GTGCAG 3 cut(s) 208, 461, 749
Bsh1236I CGCG 4 cut(s) 239, 269, 293, 308
BshFI GGCC 3 cut(s) 266, 381, 499
BshNI GGYRCC 3 cut(s) 367, 423, 471
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 465, 750
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 7 cut(s) 220, 268, 337, 377, 412, 569, 630
BsmAI GTCTC 2 cut(s) 335, 740
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 266, 381, 499
Bso31I GGTCTC 2 cut(s) 335, 740
Bsp1286I GDGCHC 3 cut(s) 27, 237, 426
Bsp143I GATC 3 cut(s) 13, 538, 685
Bsp1720I GCTNAGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 266, 381, 499
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 4 cut(s) 239, 269, 293, 308
BspLI GGNNCC 5 cut(s) 48, 274, 369, 425, 473
BspMI ACCTGC 2 cut(s) 180, 483
BspPI GGATC 3 cut(s) 21, 546, 693
BspT107I GGYRCC 3 cut(s) 367, 423, 471
BspTNI GGTCTC 2 cut(s) 335, 740
BssECI CCNNGG 6 cut(s) 219, 267, 276, 376, 409, 802
BssMI GATC 3 cut(s) 13, 538, 685
BssNI GRCGYC 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 263, 377
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 623
BstACI GRCGYC 1 cut(s) 617
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 4 cut(s) 187, 237, 504, 681
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 3 cut(s) 219, 267, 409
BstF5I GGATG 2 cut(s) 675, 786
BstFNI CGCG 4 cut(s) 239, 269, 293, 308
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 4 cut(s) 241, 295, 305, 508
BstKTI GATC 3 cut(s) 16, 541, 688
BstMAI GTCTC 2 cut(s) 335, 740
BstMBI GATC 3 cut(s) 13, 538, 685
BstNI CCWGG 2 cut(s) 263, 377
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 3 cut(s) 261, 375, 463
BstSLI GKGCMC 2 cut(s) 237, 426
BstUI CGCG 4 cut(s) 239, 269, 293, 308
BstV1I GCAGC 5 cut(s) 121, 130, 134, 495, 502
BsuRI GGCC 3 cut(s) 266, 381, 499
BtgI CCRYGG 3 cut(s) 219, 267, 409
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 2 cut(s) 675, 786
BveI ACCTGC 2 cut(s) 180, 483
Cac8I GCNNGC 4 cut(s) 187, 237, 504, 681
CfoI GCGC 4 cut(s) 241, 295, 305, 508
Cfr13I GGNCC 2 cut(s) 379, 639
Cfr42I CCGCGG 1 cut(s) 270
CseI GACGC 4 cut(s) 292, 299, 496, 749
Csp6I GTAC 2 cut(s) 451, 472
CviAII CATG 2 cut(s) 553, 764
CviQI GTAC 2 cut(s) 451, 472
DdeI CTNAG 1 cut(s) 150
DpnI GATC 3 cut(s) 15, 540, 687
DpnII GATC 3 cut(s) 13, 538, 685
DraIII CACNNNGTG 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 623
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 623
EciI GGCGGA 2 cut(s) 594, 698
Eco31I GGTCTC 2 cut(s) 335, 740
Eco47I GGWCC 1 cut(s) 639
Eco72I CACGTG 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 261, 375
EcoT22I ATGCAT 1 cut(s) 786
FaeI CATG 2 cut(s) 556, 767
FaiI YATR 4 cut(s) 195, 554, 765, 786
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 552, 763
FauI CCCGC 5 cut(s) 262, 435, 440, 461, 518
FblI GTMKAC 1 cut(s) 515
FokI GGATG 2 cut(s) 682, 793
GlaI GCGC 4 cut(s) 240, 294, 304, 507
GsaI CCCAGC 2 cut(s) 567, 695
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 3 cut(s) 266, 381, 499
HapII CCGG 2 cut(s) 465, 750
HgaI GACGC 4 cut(s) 292, 299, 496, 749
HhaI GCGC 4 cut(s) 241, 295, 305, 508
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 2 cut(s) 556, 767
Hin6I GCGC 4 cut(s) 239, 293, 303, 506
HinP1I GCGC 4 cut(s) 239, 293, 303, 506
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 4 cut(s) 59, 102, 559, 703
HpaII CCGG 2 cut(s) 465, 750
Hpy166II GTNNAC 2 cut(s) 70, 516
Hpy188I TCNGA 2 cut(s) 107, 708
Hpy188III TCNNGA 4 cut(s) 17, 542, 637, 653
Hpy8I GTNNAC 2 cut(s) 70, 516
Hpy99I CGWCG 7 cut(s) 350, 490, 517, 551, 619, 622, 746
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 3 cut(s) 384, 480, 617
HpyCH4V TGCA 4 cut(s) 189, 478, 730, 784
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 3 cut(s) 384, 480, 617
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 2 cut(s) 556, 767
HspAI GCGC 4 cut(s) 239, 293, 303, 506
KpnI GGTACC 1 cut(s) 475
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 3 cut(s) 13, 538, 685
LmnI GCTCC 5 cut(s) 22, 46, 272, 655, 676
Lsp1109I GCAGC 5 cut(s) 121, 130, 134, 495, 502
LweI GCATC 2 cut(s) 660, 771
MaeII ACGT 3 cut(s) 384, 480, 617
MaeIII GTNAC 3 cut(s) 53, 311, 481
MalI GATC 3 cut(s) 15, 540, 687
MboI GATC 3 cut(s) 13, 538, 685
MboII GAAGA 2 cut(s) 220, 640
MhlI GDGCHC 3 cut(s) 27, 237, 426
MluCI AATT 1 cut(s) 431
MlyI GAGTC 2 cut(s) 53, 111
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 632
MspA1I CMGCKG 5 cut(s) 269, 364, 390, 502, 567
MspI CCGG 2 cut(s) 465, 750
MspR9I CCNGG 3 cut(s) 263, 377, 465
MvaI CCWGG 2 cut(s) 263, 377
MvnI CGCG 4 cut(s) 239, 269, 293, 308
NciI CCSGG 1 cut(s) 465
NdeII GATC 3 cut(s) 13, 538, 685
NlaIII CATG 2 cut(s) 556, 767
NlaIV GGNNCC 5 cut(s) 48, 274, 369, 425, 473
NmeAIII GCCGAG 4 cut(s) 75, 301, 416, 783
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 1 cut(s) 556
PciI ACATGT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 559, 703
PflFI GACNNNGTC 1 cut(s) 619
PflMI CCANNNNNTGG 1 cut(s) 220
PleI GAGTC 2 cut(s) 53, 110
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
PpsI GAGTC 2 cut(s) 53, 110
Ppu21I YACGTR 1 cut(s) 481
PscI ACATGT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 261, 375
PspCI CACGTG 1 cut(s) 481
PspFI CCCAGC 2 cut(s) 563, 691
PspGI CCWGG 2 cut(s) 261, 375
PspN4I GGNNCC 5 cut(s) 48, 274, 369, 425, 473
PspPI GGNCC 2 cut(s) 379, 639
PsyI GACNNNGTC 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 452, 473
RsaNI GTAC 2 cut(s) 451, 472
SacII CCGCGG 1 cut(s) 270
SalI GTCGAC 1 cut(s) 514
Sau3AI GATC 3 cut(s) 13, 538, 685
Sau96I GGNCC 2 cut(s) 379, 639
SchI GAGTC 2 cut(s) 53, 111
ScrFI CCNGG 3 cut(s) 263, 377, 465
SduI GDGCHC 3 cut(s) 27, 237, 426
SfaNI GCATC 2 cut(s) 660, 771
Sfr303I CCGCGG 1 cut(s) 270
SgrBI CCGCGG 1 cut(s) 270
SinI GGWCC 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 1 cut(s) 431
StyD4I CCNGG 3 cut(s) 261, 375, 463
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 3 cut(s) 387, 483, 620
TaqI TCGA 2 cut(s) 515, 557
TaqII GACCGA 1 cut(s) 359
TasI AATT 1 cut(s) 431
TfiI GAWTC 2 cut(s) 559, 703
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 5 cut(s) 122, 134, 143, 490, 508
Tsp45I GTSAC 1 cut(s) 481
TspGWI ACGGA 2 cut(s) 93, 551
Tth111I GACNNNGTC 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 639
XceI RCATGY 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 632
ZraI GACGTC 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.