Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Forward (+)

30606774 .. 30610040

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTTGTTCCGGCCTCGGATTTGCCTGAAAACAATCACCAGCCCATGGATGTTGTTGCACAGCCTGAAAATGCTAATAATGTGGAGAACCAACCAGTAGAAGATCCTCCTTCATCGAGATTCACATGGAGAATTGACAACTTTTCTAGGATGAATACAAAGAAGCTTTATTCTGACATATTCGTTGTTGGTGGCTATAAATGTTCCGTTTTTGCTTGTTCCTTCATTCTGCATTCTTCATTCTCTTCTGTCTATTCCCCCTGTCCACCATCACAGATTCACAGATACGGCATCCTTTCACATGTTACAGTTTTTACTCTGTCTGCACTTTGGAGATTACAAATGGATAATATCAATGGAGCTCCATCACATAATTTTGTAACATATTTTGTGTGGATAAGTGGTTTAAAGAGATACATGGGTGACCTTGGAGTTCTTGGAACTGGAATACCAATAGGAAAACTTGATATGTATGTTGCTGCAGCTGGTATTAATTCAGAGTCATTGGGAGATCAAGCGGAATACCAAGCAACGCAGCAAGTTATATTATCTTTCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

187

Amino Acids

20.79

Weight (kDa)

5.64

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	40 - 69	9.9e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	301
AluBI	AGCT	3 cut(s)	166, 362, 485
AluI	AGCT	3 cut(s)	166, 362, 485
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	3 cut(s)	479, 482, 535
AseI	ATTAAT	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	29, 434
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	466, 494, 547
BccI	CCATC	2 cut(s)	277, 373
BceAI	ACGGC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	3 cut(s)	480, 483, 536
BlsI	GCNGC	3 cut(s)	481, 484, 537
BmsI	GCATC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	15, 45, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	95, 448
BseDI	CCNNGG	3 cut(s)	15, 45, 427
BseGI	GGATG	3 cut(s)	55, 156, 291
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	95, 448
BseXI	GCAGC	3 cut(s)	466, 494, 547
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	103, 511
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	95, 448
BssECI	CCNNGG	3 cut(s)	15, 45, 427
BssMI	GATC	2 cut(s)	103, 511
BssT1I	CCWWGG	2 cut(s)	45, 427
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	55, 156, 291
BstKTI	GATC	2 cut(s)	106, 514
BstMBI	GATC	2 cut(s)	103, 511
BstNSI	RCATGY	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	466, 494, 547
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	55, 156, 291
CviAII	CATG	5 cut(s)	46, 126, 302, 418, 559
CviJI	RGCY	7 cut(s)	14, 43, 64, 166, 195, 362, 485
CviKI_1	RGCY	7 cut(s)	14, 43, 64, 166, 195, 362, 485
DpnI	GATC	2 cut(s)	105, 513
DpnII	GATC	2 cut(s)	103, 511
DraI	TTTAAA	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	45, 427
Eco24I	GRGCYC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	45, 427
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	2 cut(s)	45, 427
FaeI	CATG	5 cut(s)	49, 129, 305, 421, 562
FatI	CATG	5 cut(s)	45, 125, 301, 417, 558
Fnu4HI	GCNGC	3 cut(s)	480, 483, 536
FokI	GGATG	3 cut(s)	62, 163, 278
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	480, 483, 536
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	3 cut(s)	480, 483, 536
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	5 cut(s)	49, 129, 305, 421, 562
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	3 cut(s)	120, 277, 500
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	29, 434
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	19, 175, 499
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	120, 232
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	4 cut(s)	59, 232, 326, 482
Hsp92II	CATG	5 cut(s)	49, 129, 305, 421, 562
Kzo9I	GATC	2 cut(s)	103, 511
LmnI	GCTCC	2 cut(s)	359, 367
LpnPI	CCDG	8 cut(s)	24, 39, 53, 78, 108, 274, 429, 471
Lsp1109I	GCAGC	3 cut(s)	466, 494, 547
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	304, 379, 422
MalI	GATC	2 cut(s)	105, 513
MboI	GATC	2 cut(s)	103, 511
MboII	GAAGA	3 cut(s)	113, 228, 237
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	3 cut(s)	132, 373, 493
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	2 cut(s)	25, 117
MseI	TTAA	2 cut(s)	407, 492
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	103, 511
NlaIII	CATG	5 cut(s)	49, 129, 305, 421, 562
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	1 cut(s)	305
PciI	ACATGT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	120, 277
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	481, 484, 537
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PscI	ACATGT	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	407, 492
SatI	GCNGC	3 cut(s)	480, 483, 536
Sau3AI	GATC	2 cut(s)	103, 511
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	4 cut(s)	168, 364, 429, 487
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	480
Sse9I	AATT	3 cut(s)	132, 373, 493
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	45, 427
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	132, 373, 493
TfiI	GAWTC	2 cut(s)	120, 277
Tru1I	TTAA	2 cut(s)	407, 492
Tru9I	TTAA	2 cut(s)	407, 492
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	3 cut(s)	479, 482, 535
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	102, 167, 214, 228, 544
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	492
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.