Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Forward (+)

58246926 .. 58248287

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAATTCAACGACCAGCACGAGGAACAAGATGAGGAAATGGAGATGAGCCCGACCGCACCAACACCACCCCGTTACGACGCTTCCATGCCCAAAATGGGGCCCTCTAGCGGCGGTGGAGGAGAGGCCACAGCCAGAAAAAGGGGTCTCTCCATCTCGACCGTCTCCACTATCAGGTACAGAGAATGCCAGAAGAACCACGCCGTTAACATCGGAGGCCATGCCCTCGATGGTTGCTGCGAATTCCTTGCGGCCGGAGAGGAGGGCACGCTTGACGCCCTCAAATGCGCCGCGTGCAACTGCCACCGCAATTTCCACCGGAAGGAGCCCGCGGAAGGAGGTGGTGGGGCCATTCTTCCCCACCAACACACCCAGCAGCCGTTCTCAGCTTACTACCGCCACCCTTATCCGCCCACGCCATCGGGTTACCTCCACCTGACCCCGGCGCAGCCGCATAGGCCTCTGGCCTTGCCCGCGGCTGGGTCGGGCGGGTCCCACAGCAGGGAGGAAGGGGATGACGTGTCGAACCCGAGTTCTAGCGGGGGCGGCGTGAGTGGAGTTGGGCTGTTGAAAAAGAGATTTAGGACCAAGTTTACGGCGGAGCAGAAGGAGAAGATGGTGGAGTTTGCTGAGAAGGTAGGGTGGCGGATTCAGAAGCACGACGAGGCGGAGGTGGAGGAGTTCTGCGCCGACACTGGGGTGAAACGACAGGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTATCGGTAAGAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

254

Amino Acids

27.71

Weight (kDa)

6.92

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	58 - 110	3.8e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	293, 332, 476
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	5, 242
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	10, 571
AjiI	CACGTC	1 cut(s)	520
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	152, 169
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	7 cut(s)	101, 126, 217, 252, 348, 458, 465
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	237, 376, 448
ApoI	RAATTY	2 cut(s)	5, 242
AspLEI	GCGC	3 cut(s)	290, 448, 689
AspS9I	GGNCC	5 cut(s)	101, 102, 348, 492, 585
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	712
AvaI	CYCGRG	1 cut(s)	529
AvaII	GGWCC	2 cut(s)	492, 585
BaeGI	GKGCMC	2 cut(s)	105, 269
BanII	GRGCYC	3 cut(s)	53, 105, 330
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	224, 388, 460
BccI	CCATC	4 cut(s)	161, 224, 427, 610
BceAI	ACGGC	3 cut(s)	188, 364, 612
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	152, 169
BfaI	CTAG	2 cut(s)	108, 537
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	9 cut(s)	112, 238, 252, 291, 377, 449, 452, 477, 547
BlsI	GCNGC	9 cut(s)	113, 239, 253, 292, 378, 450, 453, 478, 548
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	492, 585
BmeT110I	CYCGRG	1 cut(s)	529
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	5 cut(s)	101, 102, 348, 492, 585
BmiI	GGNNCC	6 cut(s)	102, 103, 327, 349, 493, 494
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	717
BmuI	ACTGGG	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	330, 441, 474
BsaWI	WCCGGW	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	700
BseDI	CCNNGG	3 cut(s)	330, 441, 474
BseGI	GGATG	2 cut(s)	520, 732
BseMII	CTCAG	2 cut(s)	399, 621
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	3 cut(s)	135, 275, 692
BseSI	GKGCMC	2 cut(s)	105, 269
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	224, 388, 460
BseYI	CCCAGC	2 cut(s)	372, 479
Bsh1236I	CGCG	3 cut(s)	293, 332, 476
Bsh1285I	CGRYCG	3 cut(s)	57, 162, 255
BshFI	GGCC	7 cut(s)	103, 128, 219, 254, 350, 460, 467
BsiEI	CGRYCG	3 cut(s)	57, 162, 255
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	3 cut(s)	255, 319, 443
BslFI	GGGAC	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	152, 169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	7 cut(s)	103, 128, 219, 254, 350, 460, 467
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	529
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	53, 105, 269, 330, 717
BspANI	GGCC	7 cut(s)	103, 128, 219, 254, 350, 460, 467
BspCNI	CTCAG	2 cut(s)	398, 622
BspFNI	CGCG	3 cut(s)	293, 332, 476
BspLI	GGNNCC	6 cut(s)	102, 103, 327, 349, 493, 494
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	3 cut(s)	330, 441, 474
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	4 cut(s)	269, 295, 330, 474
BstDEI	CTNAG	2 cut(s)	385, 630
BstDSI	CCRYGG	2 cut(s)	330, 474
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	520, 732
BstFNI	CGCG	3 cut(s)	293, 332, 476
BstHHI	GCGC	3 cut(s)	290, 448, 689
BstMAI	GTCTC	2 cut(s)	152, 169
BstMCI	CGRYCG	3 cut(s)	57, 162, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 457, 473, 546
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	441
BstSLI	GKGCMC	2 cut(s)	105, 269
BstUI	CGCG	3 cut(s)	293, 332, 476
BstV1I	GCAGC	3 cut(s)	224, 388, 460
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	7 cut(s)	103, 128, 219, 254, 350, 460, 467
BtgI	CCRYGG	2 cut(s)	330, 474
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	520, 732
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	4 cut(s)	269, 295, 330, 474
CfoI	GCGC	3 cut(s)	290, 448, 689
Cfr13I	GGNCC	5 cut(s)	101, 102, 348, 492, 585
Cfr42I	CCGCGG	2 cut(s)	333, 477
CseI	GACGC	2 cut(s)	89, 284
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	88, 221
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	385, 630
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
EciI	GGCGGA	4 cut(s)	399, 614, 661, 683
EclXI	CGGCCG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	460
Eco24I	GRGCYC	3 cut(s)	53, 105, 330
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	492, 585
Eco52I	CGGCCG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	529
Eco91I	GGTNACC	1 cut(s)	425
EcoO109I	RGGNCCY	3 cut(s)	101, 102, 492
EcoO65I	GGTNACC	1 cut(s)	425
EcoRI	GAATTC	2 cut(s)	5, 242
EcoT38I	GRGCYC	3 cut(s)	53, 105, 330
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	91, 224
FaiI	YATR	3 cut(s)	89, 222, 456
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	87, 220
FauI	CCCGC	4 cut(s)	337, 481, 482, 533
Fnu4HI	GCNGC	9 cut(s)	112, 238, 252, 291, 377, 449, 452, 477, 547
FokI	GGATG	2 cut(s)	527, 739
FriOI	GRGCYC	3 cut(s)	53, 105, 330
Fsp4HI	GCNGC	9 cut(s)	112, 238, 252, 291, 377, 449, 452, 477, 547
FspBI	CTAG	2 cut(s)	108, 537
GlaI	GCGC	3 cut(s)	289, 447, 688
GluI	GCNGC	9 cut(s)	112, 238, 252, 291, 377, 449, 452, 477, 547
GsaI	CCCAGC	2 cut(s)	376, 483
HaeIII	GGCC	7 cut(s)	103, 128, 219, 254, 350, 460, 467
HapII	CCGG	3 cut(s)	255, 319, 443
HgaI	GACGC	2 cut(s)	89, 284
HhaI	GCGC	3 cut(s)	290, 448, 689
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	91, 224
Hin6I	GCGC	3 cut(s)	288, 446, 687
HinP1I	GCGC	3 cut(s)	288, 446, 687
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	649
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	3 cut(s)	255, 319, 443
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	2 cut(s)	208, 594
Hpy188I	TCNGA	2 cut(s)	215, 654
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	208, 594
Hpy99I	CGWCG	2 cut(s)	83, 665
HpyAV	CCTTC	5 cut(s)	316, 329, 503, 601, 628
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	297, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 457, 473, 546
HpyF3I	CTNAG	2 cut(s)	385, 630
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	91, 224
HspAI	GCGC	3 cut(s)	288, 446, 687
KflI	GGGWCCC	1 cut(s)	492
KspAI	GTTAAC	1 cut(s)	208
KspI	CCGCGG	2 cut(s)	333, 477
LmnI	GCTCC	2 cut(s)	325, 601
Lsp1109I	GCAGC	3 cut(s)	224, 388, 460
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	2 cut(s)	108, 537
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	74, 425
MboII	GAAGA	3 cut(s)	205, 347, 625
MhlI	GDGCHC	5 cut(s)	53, 105, 269, 330, 717
MluCI	AATT	3 cut(s)	5, 242, 310
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	2 cut(s)	332, 476
MspI	CCGG	3 cut(s)	255, 319, 443
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	191
MvnI	CGCG	3 cut(s)	293, 332, 476
MwoI	GCNNNNNNNGC	4 cut(s)	294, 457, 473, 546
NciI	CCSGG	1 cut(s)	443
NlaIII	CATG	2 cut(s)	91, 224
NlaIV	GGNNCC	6 cut(s)	102, 103, 327, 349, 493, 494
OliI	CACNNNNGTG	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	649
PkrI	GCNGC	9 cut(s)	113, 239, 253, 292, 378, 450, 453, 478, 548
PpuMI	RGGWCCY	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	425
PspFI	CCCAGC	2 cut(s)	372, 479
PspN4I	GGNNCC	6 cut(s)	102, 103, 327, 349, 493, 494
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	5 cut(s)	101, 102, 348, 492, 585
PspPPI	RGGWCCY	1 cut(s)	492
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	698
SacII	CCGCGG	2 cut(s)	333, 477
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	9 cut(s)	112, 238, 252, 291, 377, 449, 452, 477, 547
Sau96I	GGNCC	5 cut(s)	101, 102, 348, 492, 585
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	5 cut(s)	53, 105, 269, 330, 717
SfaNI	GCATC	1 cut(s)	717
Sfr303I	CCGCGG	2 cut(s)	333, 477
SgrBI	CCGCGG	2 cut(s)	333, 477
SinI	GGWCC	2 cut(s)	492, 585
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	3 cut(s)	5, 242, 310
SseBI	AGGCCT	1 cut(s)	460
SspMI	CTAG	2 cut(s)	108, 537
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	158, 228, 524
TasI	AATT	3 cut(s)	5, 242, 310
TauI	GCSGC	6 cut(s)	114, 254, 293, 454, 479, 549
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	3 cut(s)	237, 376, 448
TspRI	CASTG	1 cut(s)	700
VpaK11BI	GGWCC	2 cut(s)	492, 585
XapI	RAATTY	2 cut(s)	5, 242
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 227
XspI	CTAG	2 cut(s)	108, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.