Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

46856040 .. 46859412

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1380900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAATTTGACGAGCACGAAGAGCAAGACGAGGAGATGGAGTTGCAGGCGGCGCCACCAGGTTACGCCTCTGTTGCGGCTAGTTCCAGGCCCAAATTGGGGCCCACCGGCGAGGGGGCTGCCTCCATCGTTCGAAAAAGGGGAACCGCCGCAACACCCAACTCCACCACGACCACCACTGCCGTATCCACCATGGTCAGGTACAGAGAGTGCCTCAAGAACCACGCCATCGGCATCGGCGGCCACGCCCTCGACGGCTGCGGGGAGTTTCTCGCTGCGGGAGACGAGGGCACCCTCGATGCCTTAAAATGCGCCGCCTGCAATTGCCACCGCAACTTCCACCGCAAGGAGCCCGAGGCCGAGTTAATTCATCACCAACAGGGTGCCGGTGGGTCCCACCACCTTCACCACCACCACCATCCGCACCAATTCTCCTCGGGCTACTATCGCCCACCGCCGCCACCTTCTGGCTATCTGATCACCTCGCCGCATGCAAGGCCGACACTGGCCTTGCCTGCTGCATCAGGCGGCGGCGGAGGGTCTCATAGTAGGGAAGAGGAAGAGGACGTGTCGAATCCGAGTTCGAGCGGCGGTGGAGGCGGAGGAGGATTCGGGATGAGCAAGAAGAGACACCGGACAAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAGTTCGCGGAGAAAGTTGGGTGGAGAATTCAGAAACATGAAGAAGCAGCGATTGAGGAGTTTTGCGAAGAGACCGGAGTGAAGCGCCATGTGTTCAAGGTTTGGATGCACAACAACAAGCACACTCTTGTTTTCACTGCAAGCTCTCTTCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

277

Amino Acids

29.86

Weight (kDa)

6.51

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	66 - 118	1.3e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	52, 290, 383
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	588
AccII	CGCG	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	5, 699
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	98, 99, 114, 198, 346, 467
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	1 cut(s)	769
AjiI	CACGTC	1 cut(s)	568
AjnI	CCWGG	2 cut(s)	58, 86
AluBI	AGCT	1 cut(s)	816
AluI	AGCT	1 cut(s)	816
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	4 cut(s)	276, 546, 622, 737
Ama87I	CYCGRG	2 cut(s)	353, 436
AoxI	GGCC	6 cut(s)	89, 101, 241, 357, 497, 507
ApaI	GGGCCC	1 cut(s)	105
ApeKI	GCWGC	5 cut(s)	119, 258, 275, 518, 719
ApoI	RAATTY	2 cut(s)	5, 699
AspLEI	GCGC	3 cut(s)	55, 314, 759
AspS9I	GGNCC	4 cut(s)	90, 101, 102, 393
AsuHPI	GGTGA	3 cut(s)	365, 398, 472
AsuII	TTCGAA	1 cut(s)	133
AvaI	CYCGRG	2 cut(s)	353, 436
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	2 cut(s)	105, 293
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BanI	GGYRCC	3 cut(s)	52, 290, 383
BanII	GRGCYC	2 cut(s)	105, 354
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	106, 245, 262, 505, 731
BccI	CCATC	4 cut(s)	31, 134, 236, 426
BceAI	ACGGC	2 cut(s)	167, 271
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	60, 88
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	4 cut(s)	276, 546, 622, 737
BfaI	CTAG	1 cut(s)	81
BfoI	RGCGCY	2 cut(s)	56, 760
BfuI	GTATCC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	60, 88
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	2 cut(s)	353, 436
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	4 cut(s)	90, 101, 102, 393
BmiI	GGNNCC	9 cut(s)	54, 102, 103, 145, 292, 351, 385, 394, 395
BmrFI	CCNGG	2 cut(s)	60, 88
BmsI	GCATC	5 cut(s)	243, 289, 530, 657, 768
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	2 cut(s)	546, 737
BsaJI	CCNNGG	3 cut(s)	192, 354, 435
BsaWI	WCCGGW	2 cut(s)	633, 746
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 416, 446
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 99, 114, 198, 346, 467
Bse118I	RCCGGY	2 cut(s)	107, 386
Bse1I	ACTGG	2 cut(s)	510, 824
BseBI	CCWGG	2 cut(s)	60, 88
BseDI	CCNNGG	3 cut(s)	192, 354, 435
BseGI	GGATG	3 cut(s)	418, 621, 783
BseLI	CCNNNNNNNGG	6 cut(s)	98, 99, 114, 198, 346, 467
BseNI	ACTGG	2 cut(s)	510, 824
BseRI	GAGGAG	4 cut(s)	47, 424, 618, 743
BseSI	GKGCMC	2 cut(s)	105, 293
BseXI	GCAGC	5 cut(s)	106, 245, 262, 505, 731
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	6 cut(s)	91, 103, 243, 359, 499, 509
BshNI	GGYRCC	3 cut(s)	52, 290, 383
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	353, 436
BsiSI	CCGG	4 cut(s)	108, 387, 634, 747
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	6 cut(s)	98, 99, 114, 198, 346, 467
BsmAI	GTCTC	4 cut(s)	276, 546, 622, 737
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	6 cut(s)	91, 103, 243, 359, 499, 509
Bso31I	GGTCTC	2 cut(s)	546, 737
BsoBI	CYCGRG	2 cut(s)	353, 436
Bsp119I	TTCGAA	1 cut(s)	133
Bsp120I	GGGCCC	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	18, 105, 293, 354
Bsp143I	GATC	1 cut(s)	477
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	6 cut(s)	91, 103, 243, 359, 499, 509
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	9 cut(s)	54, 102, 103, 145, 292, 351, 385, 394, 395
BspQI	GCTCTTC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	3 cut(s)	52, 290, 383
BspTNI	GGTCTC	2 cut(s)	546, 737
BsrBI	CCGCTC	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	107, 386
BsrI	ACTGG	2 cut(s)	510, 824
BssAI	RCCGGY	2 cut(s)	107, 386
BssECI	CCNNGG	3 cut(s)	192, 354, 435
BssMI	GATC	1 cut(s)	477
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	60, 88
Bst6I	CTCTTC	6 cut(s)	15, 549, 555, 620, 735, 825
BstACI	GRCGYC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	5 cut(s)	48, 319, 492, 516, 814
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	418, 621, 783
BstFNI	CGCG	1 cut(s)	680
BstH2I	RGCGCY	2 cut(s)	56, 760
BstHHI	GCGC	3 cut(s)	55, 314, 759
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	4 cut(s)	276, 546, 622, 737
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 52, 74, 240, 318, 447, 496, 515, 597
BstNI	CCWGG	2 cut(s)	60, 88
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	58, 86
BstSLI	GKGCMC	2 cut(s)	105, 293
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	5 cut(s)	106, 245, 262, 505, 731
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	6 cut(s)	91, 103, 243, 359, 499, 509
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	418, 621, 783
BtsI	GCAGTG	2 cut(s)	177, 807
BtsIMutI	CAGTG	3 cut(s)	177, 503, 807
Cac8I	GCNNGC	5 cut(s)	48, 319, 492, 516, 814
CfoI	GCGC	3 cut(s)	55, 314, 759
Cfr10I	RCCGGY	2 cut(s)	107, 386
Cfr13I	GGNCC	4 cut(s)	90, 101, 102, 393
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	193, 491, 710, 761
CviQI	GTAC	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	6 cut(s)	15, 549, 555, 620, 735, 825
EarI	CTCTTC	6 cut(s)	15, 549, 555, 620, 735, 825
EciI	GGCGGA	2 cut(s)	549, 615
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	2 cut(s)	105, 354
Eco31I	GGTCTC	2 cut(s)	546, 737
Eco47I	GGWCC	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	353, 436
EcoO109I	RGGNCCY	2 cut(s)	101, 393
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	58, 86
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	2 cut(s)	105, 354
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	196, 494, 713, 764
FaiI	YATR	5 cut(s)	194, 492, 546, 711, 762
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	4 cut(s)	192, 490, 709, 760
FauI	CCCGC	2 cut(s)	254, 271
FbaI	TGATCA	1 cut(s)	477
FokI	GGATG	3 cut(s)	405, 628, 790
FriOI	GRGCYC	2 cut(s)	105, 354
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	3 cut(s)	54, 313, 758
GsuI	CTGGAG	1 cut(s)	692
HaeII	RGCGCY	2 cut(s)	56, 760
HaeIII	GGCC	6 cut(s)	91, 103, 243, 359, 499, 509
HapII	CCGG	4 cut(s)	108, 387, 634, 747
HhaI	GCGC	3 cut(s)	55, 314, 759
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	196, 494, 713, 764
Hin6I	GCGC	3 cut(s)	53, 312, 757
HinP1I	GCGC	3 cut(s)	53, 312, 757
HinfI	GANTC	2 cut(s)	574, 609
HpaII	CCGG	4 cut(s)	108, 387, 634, 747
HphI	GGTGA	3 cut(s)	365, 398, 472
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	3 cut(s)	477, 579, 705
Hpy188III	TCNNGA	2 cut(s)	217, 613
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	413, 474, 652
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	6 cut(s)	46, 321, 494, 521, 781, 812
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 52, 74, 240, 318, 447, 496, 515, 597
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	196, 494, 713, 764
HspAI	GCGC	3 cut(s)	53, 312, 757
KasI	GGCGCC	1 cut(s)	52
KflI	GGGWCCC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	477
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	349, 652
Lsp1109I	GCAGC	5 cut(s)	106, 245, 262, 505, 731
LweI	GCATC	5 cut(s)	243, 289, 530, 657, 768
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	479
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	1 cut(s)	477
MboII	GAAGA	8 cut(s)	32, 566, 572, 637, 676, 725, 752, 812
MfeI	CAATTG	1 cut(s)	322
MhlI	GDGCHC	4 cut(s)	18, 105, 293, 354
MluCI	AATT	6 cut(s)	5, 95, 322, 366, 428, 699
Mly113I	GGCGCC	1 cut(s)	53
MseI	TTAA	2 cut(s)	305, 365
MspI	CCGG	4 cut(s)	108, 387, 634, 747
MspR9I	CCNGG	2 cut(s)	60, 88
MunI	CAATTG	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	60, 88
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	9 cut(s)	22, 52, 74, 240, 318, 447, 496, 515, 597
NarI	GGCGCC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	4 cut(s)	196, 494, 713, 764
NlaIV	GGNNCC	9 cut(s)	54, 102, 103, 145, 292, 351, 385, 394, 395
NmeAIII	GCCGAG	1 cut(s)	385
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	574, 609
PflMI	CCANNNNNTGG	1 cut(s)	467
PluTI	GGCGCC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	58, 86
PspGI	CCWGG	2 cut(s)	58, 86
PspN4I	GGNNCC	9 cut(s)	54, 102, 103, 145, 292, 351, 385, 394, 395
PspOMI	GGGCCC	1 cut(s)	101
PspPI	GGNCC	4 cut(s)	90, 101, 102, 393
PspPPI	RGGWCCY	1 cut(s)	393
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	305, 365
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	4 cut(s)	90, 101, 102, 393
ScrFI	CCNGG	2 cut(s)	60, 88
SduI	GDGCHC	4 cut(s)	18, 105, 293, 354
SetI	ASST	8 cut(s)	64, 203, 405, 466, 485, 570, 774, 818
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	5 cut(s)	243, 289, 530, 657, 768
SfoI	GGCGCC	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	6 cut(s)	5, 95, 322, 366, 428, 699
SspDI	GGCGCC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	58, 86
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	5 cut(s)	133, 252, 297, 572, 584
TasI	AATT	6 cut(s)	5, 95, 322, 366, 428, 699
TfiI	GAWTC	2 cut(s)	574, 609
Tru1I	TTAA	2 cut(s)	305, 365
Tru9I	TTAA	2 cut(s)	305, 365
TscAI	CASTG	3 cut(s)	184, 510, 814
TseI	GCWGC	5 cut(s)	119, 258, 275, 518, 719
TspDTI	ATGAA	2 cut(s)	359, 726
TspRI	CASTG	3 cut(s)	184, 510, 814
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	2 cut(s)	5, 699
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.