Rmu_sc0011702.1_g000003

ZF-HD protein dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011702.1
OG0002915
Physical Location & Seq
Forward (+)
16681 .. 17505
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011702.1_g000003.1.cds

Sequence Viewer

Length: 825 bp
atggagtttgaggatcaggaggagcacgatgaggagatggagatggagccgagttacgactcgcttgtgaacaacaacggaggaggaggaggagttggtggcagagtcagaatggcgagttccgcagccgaagcggccgcttcggctgcggctcagctacaacaacaacaacaacagcagacacggagggcgtgcaggtatagggagtgcttgaagaaccacgccgtggggattggagggcacgcgctggacgggtgcggcgagttcctggccgcgggagccgaggggacgctggacgcgctgaaatgcgccgcgtgtaactgccaccgcaacttccaccgcagggaggccgacgagccttacggtcagctggtgccgcaccagggccacgtcagcggacatcacagccaccacaacggggggttcgggcacccgcaattctcggcgagtggcgcgtactaccgcactcccggcgggtacctccacgtgacgacgcagcacaggccgctggcgctgccgtcgacctcgggcgggggaggcacggatcaggacgacgacatgtcgaatcccagcggaggcggcggcggaggagggagtgggtttggaatgggaatgggaacgacgtcgtccaagaagaggttcaggaccaagtttagtcaggagcagaaggagaggatgctggagctggcggagcggctggggtggaggattcagaagcaggacgaggcggcggtgcagagcttctgcgacgagaccggagtgaagcgtcatgtcctcaaggtttggatgcataacaacaaacacaccctcggcaagaaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

274

Amino Acids

29.56

Weight (kDa)

6.62

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 3 cut(s) 373, 429, 477
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 521
AccII CGCG 5 cut(s) 245, 275, 299, 314, 455
AclWI GGATC 2 cut(s) 21, 552
AcoI YGGCCR 2 cut(s) 135, 270
AcvI CACGTG 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 623
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 2 cut(s) 458, 479
AfiI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 346, 383, 418, 531, 575, 636
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 1 cut(s) 214
AhdI GACNNNNNGTC 1 cut(s) 559
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 267, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 4 cut(s) 157, 370, 685, 741
AluI AGCT 4 cut(s) 157, 370, 685, 741
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 2 cut(s) 21, 552
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 5 cut(s) 135, 270, 348, 385, 503
ApeKI GCWGC 4 cut(s) 125, 146, 496, 514
Asp700I GAANNNNTTC 1 cut(s) 638
Asp718I GGTACC 1 cut(s) 477
AspLEI GCGC 5 cut(s) 247, 301, 311, 455, 514
AspS9I GGNCC 2 cut(s) 385, 645
AsuC2I CCSGG 1 cut(s) 471
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 645
BaeGI GKGCMC 2 cut(s) 243, 432
BanI GGYRCC 3 cut(s) 373, 429, 477
BbrPI CACGTG 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 133, 137, 501, 508
BccI CCATC 2 cut(s) 31, 37
BceAI ACGGC 2 cut(s) 209, 502
BciT130I CCWGG 2 cut(s) 269, 383
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 186
BglI GCCNNNNNGGC 2 cut(s) 134, 143
BlpI GCTNAGC 1 cut(s) 153
Bme1390I CCNGG 3 cut(s) 269, 383, 471
Bme18I GGWCC 1 cut(s) 645
BmeRI GACNNNNNGTC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 526
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 385, 645
BmiI GGNNCC 5 cut(s) 48, 280, 375, 431, 479
BmrFI CCNGG 3 cut(s) 269, 383, 471
BmsI GCATC 2 cut(s) 666, 777
BpmI CTGGAG 1 cut(s) 701
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 6 cut(s) 225, 273, 282, 382, 525, 808
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 9 cut(s) 226, 274, 343, 346, 383, 418, 531, 575, 636
BseBI CCWGG 2 cut(s) 269, 383
BseDI CCNNGG 6 cut(s) 225, 273, 282, 382, 525, 808
BseGI GGATG 2 cut(s) 681, 792
BseLI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 346, 383, 418, 531, 575, 636
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 7 cut(s) 35, 47, 96, 99, 102, 105, 603
BseSI GKGCMC 2 cut(s) 243, 432
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 4 cut(s) 133, 137, 501, 508
BseYI CCCAGC 2 cut(s) 569, 697
BsgI GTGCAG 2 cut(s) 214, 755
Bsh1236I CGCG 5 cut(s) 245, 275, 299, 314, 455
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 5 cut(s) 137, 272, 350, 387, 505
BshNI GGYRCC 3 cut(s) 373, 429, 477
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 2 cut(s) 471, 756
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 9 cut(s) 226, 274, 343, 346, 383, 418, 531, 575, 636
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 5 cut(s) 137, 272, 350, 387, 505
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 526
Bsp1286I GDGCHC 3 cut(s) 27, 243, 432
Bsp143I GATC 2 cut(s) 13, 544
Bsp1720I GCTNAGC 1 cut(s) 153
BspANI GGCC 5 cut(s) 137, 272, 350, 387, 505
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 5 cut(s) 245, 275, 299, 314, 455
BspLI GGNNCC 5 cut(s) 48, 280, 375, 431, 479
BspMI ACCTGC 1 cut(s) 186
BspPI GGATC 2 cut(s) 21, 552
BspT107I GGYRCC 3 cut(s) 373, 429, 477
BspTNI GGTCTC 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 694
BssECI CCNNGG 6 cut(s) 225, 273, 282, 382, 525, 808
BssMI GATC 2 cut(s) 13, 544
BssNI GRCGYC 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 269, 383
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 629
BstACI GRCGYC 1 cut(s) 623
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 4 cut(s) 193, 243, 510, 687
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 2 cut(s) 225, 273
BstF5I GGATG 2 cut(s) 681, 792
BstFNI CGCG 5 cut(s) 245, 275, 299, 314, 455
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 5 cut(s) 247, 301, 311, 455, 514
BstKTI GATC 2 cut(s) 16, 547
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 2 cut(s) 13, 544
BstMCI CGRYCG 1 cut(s) 138
BstNI CCWGG 2 cut(s) 269, 383
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 267, 381, 469
BstSLI GKGCMC 2 cut(s) 243, 432
BstUI CGCG 5 cut(s) 245, 275, 299, 314, 455
BstV1I GCAGC 4 cut(s) 133, 137, 501, 508
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 5 cut(s) 137, 272, 350, 387, 505
BtgI CCRYGG 2 cut(s) 225, 273
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 681, 792
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 4 cut(s) 193, 243, 510, 687
CciNI GCGGCCGC 1 cut(s) 135
CfoI GCGC 5 cut(s) 247, 301, 311, 455, 514
Cfr13I GGNCC 2 cut(s) 385, 645
Cfr42I CCGCGG 1 cut(s) 276
CseI GACGC 4 cut(s) 298, 305, 502, 755
Csp6I GTAC 2 cut(s) 457, 478
CviAII CATG 2 cut(s) 559, 770
CviQI GTAC 2 cut(s) 457, 478
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 15, 546
DpnII GATC 2 cut(s) 13, 544
DraIII CACNNNGTG 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 135, 270
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 629
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 629
EciI GGCGGA 2 cut(s) 600, 704
EclXI CGGCCG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 746
Eco47I GGWCC 1 cut(s) 645
Eco52I CGGCCG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 267, 381
EcoT22I ATGCAT 1 cut(s) 792
FaeI CATG 2 cut(s) 562, 773
FaiI YATR 4 cut(s) 201, 560, 771, 792
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 558, 769
FauI CCCGC 4 cut(s) 268, 441, 467, 524
FblI GTMKAC 1 cut(s) 521
FokI GGATG 2 cut(s) 688, 799
GlaI GCGC 5 cut(s) 246, 300, 310, 454, 513
GsaI CCCAGC 2 cut(s) 573, 701
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 5 cut(s) 137, 272, 350, 387, 505
HapII CCGG 2 cut(s) 471, 756
HgaI GACGC 4 cut(s) 298, 305, 502, 755
HhaI GCGC 5 cut(s) 247, 301, 311, 455, 514
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 2 cut(s) 562, 773
Hin6I GCGC 5 cut(s) 245, 299, 309, 453, 512
HinP1I GCGC 5 cut(s) 245, 299, 309, 453, 512
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 59, 105, 565, 709
HpaII CCGG 2 cut(s) 471, 756
Hpy166II GTNNAC 2 cut(s) 70, 522
Hpy188I TCNGA 2 cut(s) 110, 714
Hpy188III TCNNGA 4 cut(s) 17, 548, 643, 659
Hpy8I GTNNAC 2 cut(s) 70, 522
Hpy99I CGWCG 7 cut(s) 356, 496, 523, 557, 625, 628, 752
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 3 cut(s) 390, 486, 623
HpyCH4V TGCA 3 cut(s) 195, 736, 790
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 3 cut(s) 390, 486, 623
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 2 cut(s) 562, 773
HspAI GCGC 5 cut(s) 245, 299, 309, 453, 512
KpnI GGTACC 1 cut(s) 481
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 13, 544
LmnI GCTCC 6 cut(s) 22, 46, 278, 661, 682, 691
Lsp1109I GCAGC 4 cut(s) 133, 137, 501, 508
LweI GCATC 2 cut(s) 666, 777
MaeII ACGT 3 cut(s) 390, 486, 623
MaeIII GTNAC 3 cut(s) 53, 317, 487
MalI GATC 2 cut(s) 15, 546
MbiI CCGCTC 1 cut(s) 694
MboI GATC 2 cut(s) 13, 544
MboII GAAGA 2 cut(s) 226, 646
MhlI GDGCHC 3 cut(s) 27, 243, 432
MluCI AATT 1 cut(s) 437
MlyI GAGTC 2 cut(s) 53, 114
Mph1103I ATGCAT 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 638
MspA1I CMGCKG 5 cut(s) 275, 370, 396, 508, 573
MspI CCGG 2 cut(s) 471, 756
MspR9I CCNGG 3 cut(s) 269, 383, 471
MvaI CCWGG 2 cut(s) 269, 383
MvnI CGCG 5 cut(s) 245, 275, 299, 314, 455
NciI CCSGG 1 cut(s) 471
NdeII GATC 2 cut(s) 13, 544
NlaIII CATG 2 cut(s) 562, 773
NlaIV GGNNCC 5 cut(s) 48, 280, 375, 431, 479
NmeAIII GCCGAG 4 cut(s) 75, 307, 422, 789
NmuCI GTSAC 1 cut(s) 487
NotI GCGGCCGC 1 cut(s) 135
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 2 cut(s) 565, 709
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 226
PleI GAGTC 2 cut(s) 53, 113
PmaCI CACGTG 1 cut(s) 487
PmlI CACGTG 1 cut(s) 487
PpsI GAGTC 2 cut(s) 53, 113
Ppu21I YACGTR 1 cut(s) 487
PscI ACATGT 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 267, 381
PspCI CACGTG 1 cut(s) 487
PspFI CCCAGC 2 cut(s) 569, 697
PspGI CCWGG 2 cut(s) 267, 381
PspN4I GGNNCC 5 cut(s) 48, 280, 375, 431, 479
PspPI GGNCC 2 cut(s) 385, 645
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 2 cut(s) 458, 479
RsaNI GTAC 2 cut(s) 457, 478
SacII CCGCGG 1 cut(s) 276
SalI GTCGAC 1 cut(s) 520
Sau3AI GATC 2 cut(s) 13, 544
Sau96I GGNCC 2 cut(s) 385, 645
SchI GAGTC 2 cut(s) 53, 114
ScrFI CCNGG 3 cut(s) 269, 383, 471
SduI GDGCHC 3 cut(s) 27, 243, 432
SfaNI GCATC 2 cut(s) 666, 777
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 1 cut(s) 437
StyD4I CCNGG 3 cut(s) 267, 381, 469
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 3 cut(s) 393, 489, 626
TaqI TCGA 2 cut(s) 521, 563
TasI AATT 1 cut(s) 437
TfiI GAWTC 2 cut(s) 565, 709
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 4 cut(s) 125, 146, 496, 514
Tsp45I GTSAC 1 cut(s) 487
TspGWI ACGGA 3 cut(s) 93, 199, 557
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 645
XceI RCATGY 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 638
ZraI GACGTC 1 cut(s) 624
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.